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BioLiP
>protein
NRGVLKVYLDYRRKNFNFLHNSTKMFLDNLERVLIVTGFPIPPMMVAETDGPPGALAIYRAVEMLGGKAEILTYSEVEKA
LEPFGVSLARTPEPEDYSLIISVETPGRAADGRYYSMSALEIKRDPLDGIFLKARALGIPTIGVGDGGNEIGMGKIRELV
VGHVPHGEKIASVVETDELIVSAVSNWGAYGLVAQASIEVGRNLLEGWDERRVIEAISSAGLIDGVSKTLAPSVDGIRLM
VHEGIVELLKAVVDEAIL

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4dwz:C 269 258 1.0000 0.9591 1.0000 0.0 4dwz:A, 4dwz:B, 4dwz:D, 4dwz:E, 4dwz:F, 4fc5:A, 4fc5:B, 4fc5:C, 4fc5:D, 4fc5:E, 4fc5:F, 5gl2:A, 5gl2:B, 5gl2:C, 5gl2:D, 5gl2:E, 5gl2:F, 5gl3:A, 5gl3:B, 5gl3:C, 5gl3:D, 5gl3:E, 5gl3:F, 5gl4:A, 5gl4:B, 5gl4:C, 5gl4:D, 5gl4:F, 5gl4:E
2 2doq:B 149 77 0.0969 0.1678 0.3247 0.52 2doq:A, 2doq:C, 4mbe:D, 4mbe:A
3 5wfd:B 774 149 0.1395 0.0465 0.2416 2.5 5wfc:B
4 6lcp:A 1140 84 0.0891 0.0202 0.2738 2.7 6lcr:A
5 6v8o:D 100 37 0.0543 0.1400 0.3784 3.8 6v92:D
6 7qlr:A 603 106 0.0853 0.0365 0.2075 7.3 7qlr:B, 7qlr:C, 7qlr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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