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BioLiP
>protein
NRGIESPQVLEEHGISVYASIPLSEWQKARDSYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSI
GMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSE
LLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI
FRRASAYQDYGYYEYEYKSD

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3la6:B 260 260 0.9923 0.9923 0.9923 0.0 3la6:A, 3la6:C, 3la6:D, 3la6:E, 3la6:F, 3la6:G, 3la6:H, 3la6:I, 3la6:J, 3la6:K, 3la6:L, 3la6:M, 3la6:N, 3la6:O, 3la6:P
2 7nii:E 525 256 0.5923 0.2933 0.6016 2.78e-109 7nih:A, 7nih:B, 7nih:C, 7nih:D, 7nih:E, 7nih:F, 7nih:G, 7nih:H
3 7nii:C 565 256 0.5923 0.2726 0.6016 5.67e-109 7nii:B, 7nii:G, 7nii:H
4 7nii:A 663 256 0.5923 0.2323 0.6016 2.84e-108 7nii:D, 7nii:F
5 6z0p:A 242 245 0.3769 0.4050 0.4000 7.66e-59 6z0p:B
6 4jlv:A 228 230 0.3077 0.3509 0.3478 4.47e-39
7 2ved:B 254 246 0.3077 0.3150 0.3252 1.85e-35 3bfv:A, 3bfv:B, 2ved:A
8 6u1q:A 208 191 0.2231 0.2788 0.3037 1.92e-21 6u1q:B
9 1ion:A 243 165 0.1538 0.1646 0.2424 1.89e-04
10 6iub:A 264 126 0.1269 0.1250 0.2619 0.001 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
11 2bej:A 245 112 0.1308 0.1388 0.3036 0.001 2bek:A, 2bek:B, 2bek:C, 2bek:D
12 1g3q:A 237 165 0.1462 0.1603 0.2303 0.005 1g3r:A
13 5tvk:B 242 162 0.1731 0.1860 0.2778 0.058 3k9g:A, 5tvk:A
14 6nzj:A 273 177 0.1577 0.1502 0.2316 0.060 6nzj:B
15 6g2g:B 273 194 0.1731 0.1648 0.2320 0.34 6g2g:A
16 5aup:I 241 199 0.1808 0.1950 0.2362 0.36 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
17 2oze:A 284 136 0.1500 0.1373 0.2868 0.36
18 4v02:A 244 122 0.1192 0.1270 0.2541 0.85 4v02:B, 4v03:A, 4v03:B
19 3fwy:A 268 40 0.0615 0.0597 0.4000 1.4 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
20 7dut:A 220 155 0.1308 0.1545 0.2194 1.9 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C
21 4b2g:B 572 92 0.0885 0.0402 0.2500 1.9 4b2g:A
22 4fe3:A 291 94 0.0846 0.0756 0.2340 2.2 2g06:A, 2g06:B, 2g07:A, 2g07:B, 2g08:A, 2g08:B, 2g09:A, 2g09:B, 2g0a:A, 2g0a:B, 2jga:A, 4kx3:A, 4kx5:A, 2vkq:A
23 7ejw:A 274 50 0.0538 0.0511 0.2800 2.4 7ejw:B, 5j1j:A, 5j1j:B, 8p53:A, 8p53:B, 8pb9:A, 8pb9:B
24 5if9:A 251 130 0.1308 0.1355 0.2615 4.0 5if9:B, 5ihp:A, 5ihp:B
25 6b82:B 470 81 0.0846 0.0468 0.2716 5.3 6b82:A, 4r1z:A, 4r1z:B
26 8ivp:B 322 70 0.0692 0.0559 0.2571 5.4 8ivp:A, 8ivp:C, 8ivp:D
27 2ynm:B 268 37 0.0538 0.0522 0.3784 5.5 2ynm:A
28 5k0s:C 497 33 0.0577 0.0302 0.4545 6.0 5k0s:A, 5k0s:B, 5k0t:A, 5k0t:C, 4py2:A, 4py2:B, 4py2:C
29 2afh:E 289 49 0.0500 0.0450 0.2653 6.1 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
30 6xeo:A 1118 54 0.0692 0.0161 0.3333 6.6
31 6x2f:A 1144 54 0.0692 0.0157 0.3333 6.6 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
32 6kfu:A 527 37 0.0538 0.0266 0.3784 7.7 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
33 6st5:A 913 47 0.0538 0.0153 0.2979 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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