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BioLiP
>protein
NRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQIDI
DYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFEGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLN
SPIPPLYGDVFGTNAAEIDRTPWGELE

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vpx:2 187 187 1.0000 1.0000 1.0000 4.28e-139 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
2 8i0r:2 250 246 0.9786 0.7320 0.7439 5.14e-120 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
3 7dvq:2 216 232 0.9144 0.7917 0.7371 2.55e-108 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
4 7q3l:B 110 111 0.5080 0.8636 0.8559 3.68e-61
5 7q3l:B 110 27 0.0642 0.1091 0.4444 0.37
6 7dco:2 220 211 0.4225 0.3591 0.3744 2.41e-36 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
7 5en7:A 177 39 0.0695 0.0734 0.3333 1.9 5en6:A, 5en7:C, 5en7:E, 5en7:G
8 1gxu:A 88 47 0.0749 0.1591 0.2979 4.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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