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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMR
IDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFEDRTPWGELEPS

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vpx:2 187 113 0.8871 0.5882 0.9735 1.79e-76 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
2 7vpx:2 187 28 0.0968 0.0642 0.4286 1.1 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
3 7dvq:2 216 143 0.9194 0.5278 0.7972 6.07e-76 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
4 8i0r:2 250 143 0.9194 0.4560 0.7972 5.95e-75 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
5 7q3l:B 110 121 0.8306 0.9364 0.8512 1.73e-68
6 7dco:2 220 142 0.4274 0.2409 0.3732 2.75e-26 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
7 1ogo:X 572 72 0.1532 0.0332 0.2639 0.48
8 1mky:A 407 77 0.1371 0.0418 0.2208 2.9
9 1gxu:A 88 25 0.0806 0.1136 0.4000 3.2
10 5zk4:A 287 75 0.1935 0.0836 0.3200 4.1 6apg:A, 6apg:B, 3sbm:A, 5zk4:B
11 2v45:A 723 110 0.1532 0.0263 0.1727 6.7 2jim:A, 2jio:A, 2jip:A, 2jiq:A, 2jir:A, 2nap:A, 2v3v:A
12 6dbb:A 504 28 0.1048 0.0258 0.4643 8.0 6dbb:B, 6dbb:C
13 1ffy:A 917 42 0.1048 0.0142 0.3095 8.4 1qu2:A, 1qu3:A
14 7k5j:I 979 47 0.1210 0.0153 0.3191 9.2 7k5j:D, 7k5j:A, 7k5j:C, 7k5j:G, 7k5j:K, 7k5j:S, 5tr4:A, 5tr4:C
15 5l6i:A 1007 47 0.1210 0.0149 0.3191 9.5 3cmm:A, 3cmm:C, 5l6h:A, 5l6h:C, 5l6i:C, 5l6j:A, 5l6j:C, 4nnj:A, 4nnj:C, 6nya:A, 6nya:D, 6zhu:A, 6zhu:E, 6zhu:C, 6zhu:G, 7zh9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218