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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQDYQ
KLHDAFFKWQTKPKLTIHGDLYYEGKEFDRTPWGELE

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vpx:2 187 112 0.9231 0.5775 0.9643 7.23e-75 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
2 7vpx:2 187 28 0.1111 0.0695 0.4643 0.47 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
3 7dvq:2 216 141 0.9231 0.5000 0.7660 2.91e-71 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
4 7dvq:2 216 14 0.0940 0.0509 0.7857 1.7 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
5 8i0r:2 250 141 0.9231 0.4320 0.7660 4.24e-70 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
6 8i0r:2 250 21 0.0940 0.0440 0.5238 6.0 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
7 7q3l:B 110 117 0.8803 0.9364 0.8803 1.64e-67
8 7dco:2 220 145 0.4444 0.2364 0.3586 5.01e-23 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
9 5zk4:A 287 50 0.1368 0.0557 0.3200 4.0 6apg:A, 6apg:B, 3sbm:A, 5zk4:B
10 1pdn:C 123 44 0.1111 0.1057 0.2955 5.4
11 8ei2:A 358 47 0.1111 0.0363 0.2766 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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