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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRDIDYQKL
HDAFFKWQTKPKLTIHGDLYYEGKEFE

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vpx:2 187 112 1.0000 0.5722 0.9554 5.57e-74 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
2 7dvq:2 216 141 1.0000 0.4954 0.7589 2.97e-70 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
3 8i0r:2 250 141 1.0000 0.4280 0.7589 3.31e-69 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
4 7q3l:B 110 106 0.8879 0.8636 0.8962 9.64e-63
5 7dco:2 220 136 0.4486 0.2182 0.3529 2.21e-21 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
6 2zof:A 478 60 0.1402 0.0314 0.2500 0.25 4ruh:A, 4ruh:B, 2zof:B, 2zog:A, 2zog:B
7 5zk4:A 287 50 0.1495 0.0557 0.3200 2.7 6apg:A, 6apg:B, 3sbm:A, 5zk4:B
8 1pdn:C 123 42 0.1121 0.0976 0.2857 3.2
9 8i9w:CK 238 58 0.1589 0.0714 0.2931 3.6 8i9t:CK, 8i9v:CK, 8i9x:CK, 8i9y:CK, 8i9z:CK, 8ia0:CK, 8pv1:CK, 8pv2:CK, 8pv3:CK, 8pv4:CK, 8pv5:CK, 8pv6:CK, 8pv7:CK, 8pv8:CK, 8pvk:CK, 8pvl:CK
10 6dbb:A 504 34 0.1308 0.0278 0.4118 4.1 6dbb:B, 6dbb:C
11 1gxu:A 88 23 0.0841 0.1023 0.3913 5.9
12 1k78:A 124 38 0.0841 0.0726 0.2368 8.9 1k78:I, 1k78:E, 1mdm:A
13 2d0f:A 637 23 0.0841 0.0141 0.3913 9.3 2d0g:A, 2d0h:A, 1izj:A, 1izk:A, 1ji1:A, 1ji1:B, 1uh2:A, 1uh3:A, 1uh4:A, 5z0t:A, 5z0t:B, 5z0u:A
14 2a4x:A 131 36 0.1215 0.0992 0.3611 9.6 2a4w:A, 2a4w:B, 1kll:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218