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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NRFEASLDAQDIARISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFI
ICLNYLGSPFGSAGPCSPDPDARPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKI
VPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVGQPIEAVS
SYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRSIPNSRLCV
VDTNEGHDFFVMEADKVNDAVRGFLDQ

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2vav:B 350 348 1.0000 0.9914 0.9971 0.0 2vat:A, 2vat:B, 2vat:C, 2vat:D, 2vat:E, 2vat:F, 2vat:G, 2vat:H, 2vat:I, 2vat:J, 2vat:K, 2vat:L, 2vav:A, 2vav:C, 2vav:D, 2vav:E, 2vav:F, 2vav:G, 2vav:H, 2vav:I, 2vav:J, 2vav:K, 2vav:L, 2vax:A, 2vax:B, 2vax:C, 2vax:D, 2vax:E, 2vax:F, 2vax:G, 2vax:H, 2vax:I, 2vax:J, 2vax:K, 2vax:L
2 5w8o:B 346 347 0.3804 0.3815 0.3804 3.13e-72 5w8o:A
3 6ioh:A 375 352 0.3689 0.3413 0.3636 1.04e-64 6ioh:B, 6ioi:A, 6ioi:B
4 7ryt:B 368 348 0.3516 0.3315 0.3506 1.20e-63 8f2l:B, 8f2l:A, 8f2l:C, 8f2l:D, 8f2l:F, 8f2l:G, 8f2l:H, 8f2l:I, 8f2l:J, 8f2l:K, 8f2l:L, 6pux:A, 6pux:B, 7ryt:A, 7ryt:C, 7ryt:D, 7ryt:E, 7ryt:F
5 4uhf:A 278 63 0.0490 0.0612 0.2698 0.35 4uhd:A, 4uhe:A
6 4ccw:A 285 35 0.0375 0.0456 0.3714 0.84
7 5frd:A 256 62 0.0519 0.0703 0.2903 1.6 5frd:B
8 6y2x:A 231 67 0.0692 0.1039 0.3582 1.9 6ir0:A, 6y22:A, 6y3j:A
9 7yed:H 1288 75 0.0663 0.0179 0.3067 3.1 7yed:I, 7yed:J, 7yed:K, 7yed:L, 7yev:H, 7yev:I, 7yev:J, 7yev:K, 7yev:L, 7yez:H, 7yez:I, 7yez:J, 7yez:K, 7yez:L
10 8hgw:A 288 41 0.0432 0.0521 0.3659 6.1 8hgw:B, 8hgw:C, 8hgw:D
11 1w5s:B 396 36 0.0432 0.0379 0.4167 6.9 1w5s:A, 1w5t:A, 1w5t:B, 1w5t:C
12 2q8g:A 368 36 0.0375 0.0353 0.3611 7.6 2q8h:A
13 7aih:G 365 67 0.0576 0.0548 0.2985 9.2 7am2:G, 7ane:G
14 6rtp:B 484 108 0.0865 0.0620 0.2778 9.7 5jsh:B, 5jsk:B, 5jsu:B, 5jsy:B, 5jt1:B, 6ru9:B, 6ruc:B, 2wpn:B, 6z7r:B, 6z7r:D, 6z8j:B, 6z8j:D, 6z8m:B, 6z8o:B, 6z8o:D, 6z9g:B, 6z9g:D, 6z9g:F, 6z9g:H, 6z9o:B, 6za1:B, 3ze6:B, 3ze7:B, 3ze8:B, 3ze9:B, 3zea:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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