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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRFEASLDAQDIARISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFI
ICLNYLGSPFGSAGPCSPDPDAPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIV
PIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMGQPIEAVSSYLRY
QAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRSIPNSRLCVVDTNE
GHDFFVMEADKVNDAVRGFLDQSL

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vav:B 350 349 0.9971 0.9800 0.9828 0.0 2vat:A, 2vat:B, 2vat:C, 2vat:D, 2vat:E, 2vat:F, 2vat:G, 2vat:H, 2vat:I, 2vat:J, 2vat:K, 2vat:L, 2vav:A, 2vav:C, 2vav:D, 2vav:E, 2vav:F, 2vav:G, 2vav:H, 2vav:I, 2vav:J, 2vav:K, 2vav:L, 2vax:A, 2vax:B, 2vax:C, 2vax:D, 2vax:E, 2vax:F, 2vax:G, 2vax:H, 2vax:I, 2vax:J, 2vax:K, 2vax:L
2 5w8o:B 346 344 0.3750 0.3728 0.3750 7.63e-69 5w8o:A
3 6ioh:A 375 352 0.3721 0.3413 0.3636 1.12e-61 6ioh:B, 6ioi:A, 6ioi:B
4 7ryt:B 368 348 0.3547 0.3315 0.3506 1.30e-61 8f2l:B, 8f2l:A, 8f2l:C, 8f2l:D, 8f2l:F, 8f2l:G, 8f2l:H, 8f2l:I, 8f2l:J, 8f2l:K, 8f2l:L, 6pux:A, 6pux:B, 7ryt:A, 7ryt:C, 7ryt:D, 7ryt:E, 7ryt:F
5 6y2x:A 231 66 0.0698 0.1039 0.3636 0.22 6ir0:A, 6y22:A, 6y3j:A
6 4uhf:A 278 63 0.0494 0.0612 0.2698 0.32 4uhd:A, 4uhe:A
7 4ccw:A 285 35 0.0378 0.0456 0.3714 0.85
8 8ep4:A 265 117 0.0901 0.1170 0.2650 0.91 8ep4:B, 8ep4:C, 8ew1:A, 8ew1:B, 8ew1:C
9 7yed:H 1288 76 0.0698 0.0186 0.3158 1.1 7yed:I, 7yed:J, 7yed:K, 7yed:L, 7yev:H, 7yev:I, 7yev:J, 7yev:K, 7yev:L, 7yez:H, 7yez:I, 7yez:J, 7yez:K, 7yez:L
10 5frd:A 256 62 0.0523 0.0703 0.2903 1.6 5frd:B
11 7aih:G 365 113 0.0756 0.0712 0.2301 4.3 7am2:G, 7ane:G
12 8hgw:A 288 41 0.0436 0.0521 0.3659 6.7 8hgw:B, 8hgw:C, 8hgw:D
13 1w5s:B 396 36 0.0436 0.0379 0.4167 6.8 1w5s:A, 1w5t:A, 1w5t:B, 1w5t:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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