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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRCLKANAKSCGECIQAGPNCGWCTNSTFLTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNLKPEDITQIQPQ
QLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYIS
TTPAKLRNPCTSEQNCTTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFS
TDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAV
GTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCPK
KDSDSFKIRPLGFTEEVEVILQYICEC

The query sequence (length=427) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nxd:B 690 440 0.9977 0.6174 0.9682 0.0 7ceb:B, 7cec:B, 9ckv:B, 7nwl:B, 3vi3:B, 3vi3:D, 3vi4:D, 3vi4:B, 4wjk:B, 4wk0:B, 4wk2:B, 4wk4:B
2 8zjf:B 510 430 0.5105 0.4275 0.5070 1.88e-155 3v4p:B, 3v4p:D, 3v4v:B, 3v4v:D
3 5es4:B 674 431 0.5129 0.3249 0.5081 3.82e-148 5e6r:B, 5e6s:B, 5e6s:D, 5e6s:F, 5e6u:B, 5es4:D, 5es4:F, 5es4:H, 3k6s:B, 3k6s:D, 3k6s:F, 3k6s:H, 3k71:B, 3k71:D, 3k71:F, 3k71:H, 3k72:B, 3k72:D, 4neh:B, 4nen:B, 7usl:B, 7usm:B
4 4um9:D 455 431 0.4614 0.4330 0.4571 4.51e-130 5ffg:B, 5ffo:B, 5ffo:F, 5neu:B, 8tcg:B, 4um8:B, 4um8:D, 4um9:B
5 8t2v:B 718 435 0.4567 0.2716 0.4483 1.93e-124 4cak:B, 3fcs:B, 3fcs:D, 3fcu:B, 3fcu:D, 3fcu:F, 4g1e:B, 4g1m:B, 8gcd:B, 8gce:B, 5hdb:B, 5hdb:D, 3ije:B, 7l8p:B, 7l8p:D, 7la4:B, 6mk0:B, 4mmx:B, 4mmy:B, 4mmz:B, 6msl:B, 6msu:B, 6naj:B, 3nid:B, 3nid:D, 3nif:B, 3nif:D, 3nig:B, 3nig:D, 4o02:B, 8t2u:B, 3t3m:B, 3t3m:D, 3t3p:B, 3t3p:D, 7tct:B, 7tct:D, 7td8:B, 7td8:D, 7tho:B, 7tho:D, 7tmz:B, 7tmz:D, 7tpd:B, 7tpd:D, 1tye:B, 1tye:D, 1tye:F, 7u60:B, 7u60:D, 7u9f:B, 7u9f:D, 7u9v:B, 7u9v:D, 7ubr:B, 7ubr:D, 7ucy:B, 7ucy:D, 7udg:B, 7udg:D, 7udh:B, 7udh:D, 7ue0:B, 7ue0:D, 7ufh:B, 7ufh:D, 7uh8:B, 7uh8:D, 7uje:B, 7uje:D, 7ujk:B, 7ujk:D, 7uk9:B, 7uk9:D, 7uko:B, 7uko:D, 7ukp:B, 7ukp:D, 7ukt:B, 7ukt:D, 6v4p:B, 2vc2:B, 2vdk:B, 2vdl:B, 2vdm:B, 2vdn:B, 2vdo:B, 2vdp:B, 2vdq:B, 2vdr:B, 4z7n:B, 4z7n:D, 4z7o:B, 4z7o:D, 4z7q:B, 4z7q:D, 3zdx:B, 3zdx:D, 3zdy:B, 3zdy:D, 3zdz:B, 3zdz:D, 3ze0:B, 3ze0:D, 3ze1:B, 3ze1:D, 3ze2:B, 3ze2:D
6 1u8c:B 599 435 0.4543 0.3239 0.4460 3.83e-123 1jv2:B, 1l5g:B, 1m1x:B
7 8tcf:B 359 354 0.3443 0.4095 0.4153 3.55e-93 6om1:B, 6om1:D, 6om1:F, 6om1:H, 6om2:B, 6om2:D, 6uja:B, 6ujb:B, 6ujc:B, 8vs6:B, 8vsd:B, 7y1t:B
8 6bxj:A 619 148 0.1030 0.0711 0.2973 2.79e-17 3bn3:A, 3bqm:B, 3bqm:C, 3bqn:B, 3bqn:C, 6bxb:A, 6bxb:B, 6bxf:A, 6bxf:B, 6ckb:A, 6ckb:B, 1cqp:A, 1cqp:B, 3e2m:A, 3e2m:B, 3eob:I, 3eob:J, 3f74:C, 3f78:A, 3f78:B, 3f78:C, 3hi6:A, 3hi6:B, 2ica:A, 4ixd:A, 7kc3:C, 7kc5:A, 7kc5:C, 7kc6:C, 7kc6:A, 1lfa:A, 1lfa:B, 3m6f:A, 1mjn:A, 1mq8:B, 1mq8:D, 1mq9:A, 2o7n:A, 1rd4:A, 1rd4:B, 1rd4:C, 1rd4:D, 1t0p:A, 3tcx:B, 3tcx:D, 3tcx:F, 3tcx:H, 3tcx:J, 3tcx:L, 3tcx:N, 3tcx:P, 3tcx:R, 3tcx:T, 3tcx:V, 3tcx:X, 3tcx:Z, 3tcx:b, 1xdd:A, 1xdd:B, 1xdg:A, 1xdg:B, 1xuo:A, 1xuo:B, 1zoo:A, 1zoo:B, 1zop:A, 1zop:B
9 4ap6:A 389 69 0.0468 0.0514 0.2899 0.40 4ap6:B, 4ap6:C, 4ap6:D
10 8hsg:I 1096 120 0.0749 0.0292 0.2667 2.2 3aoi:C, 3aoi:H, 3aoi:M, 4gzy:C, 4gzz:C
11 2a68:C 1119 120 0.0749 0.0286 0.2667 2.3 2a68:M, 2a69:C, 2a69:M, 2a6h:C, 2a6h:M, 3aoh:C, 2be5:C, 2be5:M, 6cuu:C, 5d4c:C, 5d4c:M, 5d4d:C, 5d4d:M, 5d4e:C, 5d4e:M, 3dxj:C, 3dxj:M, 5e17:C, 5e18:C, 7eh0:C, 7eh1:C, 7eh2:C, 7eh2:M, 3eql:C, 3eql:M, 4g7h:C, 4g7h:M, 4g7o:C, 4g7o:M, 4g7z:C, 4g7z:M, 8hsr:I, 5i2d:C, 5i2d:N, 1i6v:C, 1iw7:C, 1iw7:M, 6kqd:C, 6kqd:M, 6kqe:C, 6kqf:C, 6kqg:C, 6kqh:C, 6kql:C, 6kqm:C, 6kqn:C, 6l74:C, 6lts:C, 6m6a:C, 6m6c:C, 7mlb:C, 7mli:C, 7mlj:C, 4mq9:C, 2o5i:C, 2o5i:M, 2o5j:C, 2o5j:M, 4oin:C, 4oio:C, 4oip:C, 4oiq:C, 4oir:C, 6ovr:C, 6ovy:C, 6ow3:C, 6oy5:C, 6oy6:C, 6oy7:C, 6p70:C, 6p71:C, 2ppb:C, 2ppb:M, 4q4z:C, 4q5s:C, 7rdq:C, 1smy:C, 1smy:M, 5tmc:C, 5tmf:C, 5vo8:C, 5voi:C, 8w8n:C, 8w8o:C, 8w8p:C, 6wox:C, 6woy:C, 4wqs:C, 4wqs:M, 5x21:C, 5x22:C, 5x22:M, 4xln:C, 4xln:I, 4xlr:C, 4xlr:I, 1ynj:C, 1ynn:C, 1zyr:C, 1zyr:M
12 2cuz:A 468 99 0.0632 0.0577 0.2727 2.6 2cv0:A, 2cv0:B, 2cv1:A, 2cv1:B, 2cv2:A, 2cv2:B, 2dxi:A, 2dxi:B, 1g59:A, 1g59:C, 1j09:A, 1n75:A, 1n77:A, 1n77:B, 1n78:A, 1n78:B
13 7bi2:A 1021 57 0.0398 0.0167 0.2982 4.3
14 3ogh:B 151 81 0.0539 0.1523 0.2840 4.4 3ogh:A
15 3nvn:B 474 17 0.0258 0.0232 0.6471 6.0
16 2pyj:B 572 40 0.0328 0.0245 0.3500 6.5 2py5:A, 2py5:B, 2pyj:A, 2pyl:A, 2pzs:A, 2pzs:B, 2pzs:C, 2pzs:D, 1xhz:A, 1xhz:B, 1xhz:C, 1xhz:D, 1xi1:A, 1xi1:B
17 8ejd:c 165 84 0.0609 0.1576 0.3095 6.7 9ck8:b, 8ejd:a, 8ejd:b, 6p95:a, 6p95:b, 6p95:c, 7sgf:a, 7sgf:b, 7sgf:c, 8tyc:b, 5vk2:b
18 7r70:A 150 92 0.0632 0.1800 0.2935 6.8 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218