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BioLiP
>protein
NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQT
RFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSH
LLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDIN
PFRSSHQSAPNHNQRMARQ

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3s19:A 261 259 0.9961 0.9885 0.9961 0.0 3bp1:A, 3bp1:B, 3bp1:C, 3bp1:D, 4ghm:A, 4ghm:B, 4iqi:A, 4iqi:B, 3rzp:A, 3rzp:B, 3rzp:C, 3rzp:D, 3s19:B, 3s19:C, 3s19:D, 3uxj:A, 3uxj:B, 3uxj:C, 3uxj:D, 3uxv:A, 3uxv:B, 3uxv:C, 3uxv:D
2 4f8b:B 145 98 0.1274 0.2276 0.3367 3.53e-13 4f8b:A, 4f8b:C, 4f8b:D, 4f8b:E, 4fgc:A, 4fgc:B, 4fgc:C, 4fgc:D, 4fgc:E, 5udg:A, 5udg:D, 5udg:E
3 4uph:A 504 92 0.1081 0.0556 0.3043 0.047 4uph:B, 4uph:C, 4uph:D
4 3mq4:A 386 134 0.1120 0.0751 0.2164 0.15
5 3va7:A 1130 58 0.0656 0.0150 0.2931 0.38
6 2ckp:A 316 117 0.1004 0.0823 0.2222 1.1
7 5tuk:B 373 34 0.0463 0.0322 0.3529 3.7 5tuk:A, 5tuk:C, 5tuk:D
8 7bkb:E 411 72 0.0927 0.0584 0.3333 4.1 7bkb:e, 7bkc:E, 7bkc:e, 7bkd:E, 7bke:E
9 3sxk:A 140 98 0.1081 0.2000 0.2857 5.5 3sxk:B, 3sxm:A, 3sxm:B
10 6vbz:A 256 26 0.0425 0.0430 0.4231 5.7 6vbz:B
11 6cnb:B 1114 80 0.0849 0.0197 0.2750 6.7 8bws:B, 6cnc:B, 6cnd:B, 6cnf:B, 6eu0:B, 6eu1:B, 6f40:B, 6f41:B, 6f42:B, 6f44:B, 5fj8:B, 5fja:B, 6tut:B, 7z0h:B, 7z1l:B, 7z1m:B, 7z1n:B, 7z1o:B, 7z2z:B, 7z30:B, 7z31:B
12 4nea:A 505 90 0.0927 0.0475 0.2667 8.6 5dib:A, 5dib:B, 5dib:C, 5dib:D, 5eyu:A, 5eyu:B, 5eyu:C, 5eyu:D, 5ez4:A, 5ez4:B, 5ez4:C, 5ez4:D, 4mpy:A, 4mpy:B, 4mpy:C, 4mpy:D, 4mpy:E, 4mpy:F, 4mpy:G, 4mpy:H, 4nea:B, 4nea:C, 4nea:D, 4qn2:A, 4qn2:B, 4qn2:C, 4qn2:D, 4qn2:E, 4qn2:F, 4qn2:G, 4qn2:H, 4zwl:A, 4zwl:B, 4zwl:C, 4zwl:D, 4zwl:E, 4zwl:F, 4zwl:G, 4zwl:H, 4zxu:A, 4zxu:B, 4zxu:C, 4zxu:D, 4zxu:E, 4zxu:F, 4zxu:G, 4zxu:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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