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BioLiP
>protein
NQVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPWTLLGPLRDSEYQYIGGLIG
ALALILVATAALSSYGLVTFQGEQGSGDTLQTADGWSQFAAGFFVGGMGGAFVAYFLLENLSVVDGIFRGLFN

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5oy0:L 157 153 1.0000 0.9745 1.0000 3.78e-108 8am5:l, 8asl:l, 8asp:l, 6hqb:L, 4l6v:L, 4l6v:l, 4l6v:8, 6nwa:L, 6nwa:U, 6nwa:l, 5oy0:l, 5oy0:0, 7umh:L, 7umh:U, 7umh:l, 6uzv:L, 6uzv:0, 6uzv:l
2 7fix:L1 152 152 0.7386 0.7434 0.7434 9.69e-80 4fe1:L, 7fix:L2, 7fix:L3, 1jb0:L, 6k33:aL, 6k33:bL, 6k33:cL, 6lu1:L, 7m75:L, 7m76:L, 7m78:L, 3pcq:L, 6pfy:L, 6pfy:h, 6pfy:U, 6pgk:L, 6pgk:h, 6pgk:U, 6tra:L, 6trc:L, 6trc:l, 6trc:0, 6trd:L, 6trd:l, 6trd:0, 5zf0:L1, 5zf0:L2, 5zf0:L3, 5zf0:L4, 5zf0:L6, 5zf0:L5
3 6kmw:aL 144 144 0.5425 0.5764 0.5764 1.34e-55 6kmw:cL, 6kmw:bL
4 7y7b:L 150 140 0.5098 0.5200 0.5571 2.95e-54 7y8a:L
5 7y5e:LN 140 138 0.5163 0.5643 0.5725 1.86e-52 7y5e:L2, 7y7a:L7, 7y7a:Lo
6 8wm6:L 151 141 0.4837 0.4901 0.5248 1.14e-51 8wmj:L, 8wmv:L, 8wmw:L
7 7lx0:U 163 163 0.5033 0.4724 0.4724 4.29e-50 7lx0:L, 7lx0:l, 6pnj:L, 6pnj:U, 6pnj:l
8 6fos:L 140 139 0.4641 0.5071 0.5108 3.24e-48 7blz:L, 5zgb:L, 5zgh:L
9 7qco:L 150 146 0.4510 0.4600 0.4726 3.19e-46 7qco:S, 7qco:s, 7qco:l
10 6kmx:aL 172 163 0.4837 0.4302 0.4540 3.88e-45 6kmx:bL, 6kmx:cL
11 7a4p:L 140 141 0.4837 0.5286 0.5248 6.87e-43
12 6ly5:l 144 132 0.4641 0.4931 0.5379 2.90e-42
13 7s3d:L 170 163 0.4575 0.4118 0.4294 6.73e-42 7s3d:l, 7s3d:U
14 6zzx:L 157 153 0.4902 0.4777 0.4902 1.09e-41 6zzy:L
15 6l4u:L 137 137 0.4706 0.5255 0.5255 1.75e-41
16 6tcl:L2 167 150 0.4641 0.4251 0.4733 3.09e-41 6jeo:aL, 6jeo:bL, 6jeo:cL, 6jeo:dL, 6k61:L, 6k61:l, 6tcl:L1, 6tcl:LL, 6tcl:L
17 7yca:L 158 151 0.4248 0.4114 0.4305 4.86e-41
18 8htu:L 163 150 0.4183 0.3926 0.4267 2.13e-40 7ksq:L, 7kux:L, 6l35:L, 7xqp:L
19 7d0j:L 159 152 0.4510 0.4340 0.4539 2.75e-39 7bgi:L, 7blx:L, 7dz7:L, 7dz8:L, 8h2u:L, 7zq9:L, 7zqc:L, 7zqd:L, 7zqd:L2
20 7dr0:L 131 129 0.4118 0.4809 0.4884 3.03e-38 7dr1:L, 7dr2:aL, 7dr2:bL, 7dr2:cL, 7dr2:dL
21 6kif:L 164 150 0.4510 0.4207 0.4600 2.64e-37 6kif:n, 6kif:V, 6kig:L, 6kig:n, 6kig:V
22 6sl5:L 155 152 0.4379 0.4323 0.4408 2.76e-37
23 6vpv:L 160 143 0.4967 0.4750 0.5315 4.14e-37 6vpv:l, 6vpv:0
24 8wey:L 121 120 0.3791 0.4793 0.4833 7.96e-37
25 6igz:L 155 156 0.4248 0.4194 0.4167 2.41e-36
26 8wgh:L 162 155 0.4444 0.4198 0.4387 9.62e-36
27 5zji:L 166 150 0.4444 0.4096 0.4533 9.67e-35 8bcv:L, 8bcw:L, 7ew6:L, 7ewk:L, 7f9o:L, 7f9o:o
28 4rku:L 163 150 0.4314 0.4049 0.4400 2.69e-34 7dkz:L, 8j6z:L, 8j7a:L, 8j7b:L, 5l8r:L, 3lw5:L, 7wfe:BL, 7wg5:BL, 4xk8:L, 4xk8:l, 4y28:L, 6yac:L, 6yez:L, 6zoo:L, 6zxs:L
29 7y3f:1 466 146 0.4510 0.1481 0.4726 8.41e-34
30 7coy:aL 147 137 0.3725 0.3878 0.4161 1.16e-32 7coy:cL, 7coy:bL, 7dwq:L
31 2o01:L 164 150 0.4118 0.3841 0.4200 1.58e-32 7wfd:AL, 7wg5:AL, 2wsc:L, 2wse:L, 2wsf:L
32 8cmo:L 123 121 0.3660 0.4553 0.4628 2.01e-32
33 6jo5:L 118 123 0.3791 0.4915 0.4715 1.59e-31 6ijj:L, 6ijo:L, 6jo6:L, 7zq9:L2
34 7f4v:aL 129 134 0.3856 0.4574 0.4403 6.12e-24 7f4v:cL, 7f4v:bL
35 8jw0:l 253 124 0.3333 0.2016 0.4113 4.94e-22
36 8jjr:l 253 141 0.3660 0.2213 0.3972 2.15e-18
37 8jze:l 250 137 0.3268 0.2000 0.3650 2.52e-17 8jzf:l
38 7u6l:D 436 49 0.1046 0.0367 0.3265 0.28 7e7h:A, 7e7h:B, 7u6l:A, 7u6l:B, 7u6l:C
39 3ofk:A 204 48 0.0980 0.0735 0.3125 0.68 3ofk:B, 3ofk:C, 3ofk:D
40 3fbv:D 425 58 0.1373 0.0494 0.3621 0.91 3fbv:A, 3fbv:B, 3fbv:C, 3fbv:E, 3fbv:F, 3fbv:G, 3fbv:H, 3fbv:I, 3fbv:J, 3fbv:K, 3fbv:L, 3fbv:M, 3fbv:N, 3lj0:A, 3lj0:B, 3lj1:A, 3lj1:B, 3lj2:A, 3lj2:B, 3sdj:A, 3sdj:B, 3sdj:C, 3sdj:D, 3sdj:E, 3sdj:F, 3sdj:G, 3sdj:H, 3sdj:I, 3sdj:J, 3sdj:K, 3sdj:L, 3sdj:M, 3sdj:N
41 7p0y:A 278 18 0.0719 0.0396 0.6111 3.2 7p0y:B
42 1nw8:A 272 54 0.1111 0.0625 0.3148 3.5 1eg2:A, 1nw5:A, 1nw6:A, 1nw7:A
43 3a2s:X 341 96 0.1895 0.0850 0.3021 4.8 3vzu:X, 3vzw:X
44 7o0t:A 354 51 0.1242 0.0537 0.3725 7.1 7o0t:B, 7o0t:C, 7o0t:D
45 6zga:B 786 44 0.1046 0.0204 0.3636 7.5 4bzi:E, 4bzi:L, 4bzi:M, 6gni:E, 1m2v:B, 6zga:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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