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BioLiP
>protein
NQFVMPDLSGMFWVDAEPRLRALGWTGMLDKGADVDAGGSQHNRVVYQNPPAGTGVNRDGIITLRFGQ

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5e12:A 202 68 1.0000 0.3366 1.0000 1.28e-46 5e0y:A
2 5e12:A 202 64 0.2794 0.0941 0.2969 0.26 5e0y:A
3 3jb9:A 1964 20 0.1471 0.0051 0.5000 1.5
4 5faw:B 806 24 0.1471 0.0124 0.4167 3.8 5fau:A, 5fau:B, 5fau:C, 5fau:D, 5faw:A, 5fay:A, 5fay:B, 6nd3:A, 6nd3:B, 6nd3:C, 6nd3:D, 6nd3:E, 6nd3:F, 6nd3:G, 6nd3:H, 6vue:A, 6vue:B
5 7uhy:A 771 22 0.1618 0.0143 0.5000 5.8 7uhy:B
6 1ko6:A 152 24 0.1765 0.0789 0.5000 6.7 1ko6:C, 2q5y:A, 2q5y:C
7 1h7r:A 342 22 0.1471 0.0292 0.4545 6.9 1aw5:A, 1eb3:A, 1gjp:A, 1h7n:A, 1h7o:A, 1h7p:A, 1ohl:A, 1qml:A, 1qnv:A, 1w31:A, 1ylv:A
8 2yye:B 343 47 0.1912 0.0379 0.2766 7.3 2yye:A, 2zau:A, 2zau:C
9 1b09:A 206 29 0.1912 0.0631 0.4483 9.1 1b09:B, 1b09:C, 1b09:D, 1b09:E, 1gnh:A, 1gnh:B, 1gnh:C, 1gnh:E, 1gnh:F, 1gnh:G, 1gnh:H, 1gnh:I, 3l2y:A, 3l2y:B, 3l2y:C, 3l2y:D, 3l2y:E, 3l2y:F, 3l2y:G, 3l2y:H, 3l2y:I, 3l2y:J, 3l2y:K, 3l2y:L, 3l2y:M, 3l2y:N, 3l2y:O, 3l2y:P, 3l2y:Q, 3l2y:R, 3l2y:S, 3l2y:T, 7pk9:J, 7pk9:F, 7pk9:G, 7pk9:H, 7pk9:I, 7pk9:E, 7pk9:D, 7pk9:C, 7pk9:B, 7pk9:A, 7pkb:E, 7pkb:D, 7pkb:C, 7pkb:B, 7pkb:A, 7pkd:J, 7pkd:F, 7pkd:G, 7pkd:H, 7pkd:I, 7pkd:E, 7pkd:D, 7pkd:C, 7pkd:B, 7pkd:A, 7pke:E, 7pke:D, 7pke:C, 7pke:B, 7pke:A, 7pkf:J, 7pkf:F, 7pkf:G, 7pkf:H, 7pkf:I, 7pkf:E, 7pkf:D, 7pkf:C, 7pkf:B, 7pkf:A, 7pkg:E, 7pkg:D, 7pkg:C, 7pkg:B, 7pkg:A, 7pkh:J, 7pkh:F, 7pkh:G, 7pkh:H, 7pkh:I, 7pkh:E, 7pkh:D, 7pkh:C, 7pkh:B, 7pkh:A, 3pvn:A, 3pvn:B, 3pvn:C, 3pvn:D, 3pvn:E, 3pvn:G, 3pvn:H, 3pvn:I, 3pvn:J, 3pvn:K, 3pvn:L, 3pvn:M, 3pvn:N, 3pvn:O, 3pvn:P, 3pvn:Q, 3pvn:R, 3pvn:S, 3pvn:T, 3pvo:A, 3pvo:B, 3pvo:C, 3pvo:D, 3pvo:E, 3pvo:F, 3pvo:G, 3pvo:H, 3pvo:I, 3pvo:J, 3pvo:K, 3pvo:L, 3pvo:M, 3pvo:N, 3pvo:O, 3pvo:P, 3pvo:Q, 3pvo:R, 3pvo:S, 3pvo:T, 7tba:A, 7tba:B, 7tba:C, 7tba:D, 7tba:E, 7tba:F, 7tba:G, 7tba:H, 7tba:I, 7tba:J, 7tba:K, 7tba:L, 7tba:M, 7tba:N, 7tba:O, 7tba:P, 7tba:Q, 7tba:R, 7tba:S, 7tba:T, 8wv4:A, 8wv4:B, 8wv4:C, 8wv4:D, 8wv4:E, 8wv5:E, 8wv5:A, 8wv5:B, 8wv5:C, 8wv5:D, 8wv5:F, 8wv5:G, 8wv5:I, 8wv5:J, 8wv5:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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