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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NPYARQLRNGFRWLRFEKELENEFREFLSWNSLMQRRAAIGVAFLIWALFIVADWMMVDIRLHPSLFEQLLGVRLGMIGL
LLVVWPAAFLPSLRKVGDAIAPYCLLLINLAVLACDVLFEWHGVPRFTQLGATLGILAVFFPLGLAFWACVRLALLCLAL
NLAVFLLFGGEENLRTNLLNTLYNGLVVLICSFALYLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQ
GAREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFAVLLYDSEEGNTLAIAERLR
QAVEALGIEHLGSSAGPCLTISLGVAYSTSGMGLDALYREADRALYEAKDAGRNAVRV

The query sequence (length=378) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wcn:A 379 378 1.0000 0.9974 1.0000 0.0 8wcn:B
2 3i5a:A 319 177 0.1931 0.2288 0.4124 7.55e-37
3 3i5c:B 198 168 0.1905 0.3636 0.4286 1.81e-36 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
4 3bre:B 328 169 0.1905 0.2195 0.4260 3.08e-35 3bre:A
5 5euh:A 164 165 0.1825 0.4207 0.4182 4.06e-33 5euh:B
6 5xgd:A 548 191 0.2037 0.1405 0.4031 5.18e-28 8pps:A, 8pps:B, 5xge:A
7 8c05:A 305 176 0.1825 0.2262 0.3920 1.00e-26
8 3ign:A 166 162 0.1667 0.3795 0.3889 2.38e-25
9 4urs:A 162 158 0.1640 0.3827 0.3924 7.68e-24 4urg:A, 4urs:B
10 5euh:D 142 160 0.1587 0.4225 0.3750 1.83e-22 5euh:C
11 4zvf:A 164 158 0.1455 0.3354 0.3481 6.19e-22
12 6d9m:A 326 160 0.1534 0.1779 0.3625 7.75e-22
13 4zmm:A 164 158 0.1720 0.3963 0.4114 1.49e-21 4zmm:B
14 5llw:B 673 165 0.1534 0.0862 0.3515 2.85e-21 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
15 6et7:A 646 158 0.1481 0.0867 0.3544 3.85e-21 6et7:B
16 2v0n:A 459 174 0.1852 0.1525 0.4023 5.79e-21 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
17 4wxw:A 165 160 0.1693 0.3879 0.4000 6.04e-21
18 6hbz:B 270 164 0.1481 0.2074 0.3415 4.36e-20 6hbz:A, 6hc0:D, 6hc1:A
19 7a7e:B 176 168 0.1640 0.3523 0.3690 1.75e-19 7a7e:A, 7a7e:C
20 6zxb:A 293 161 0.1402 0.1809 0.3292 1.20e-18 6zxb:B, 6zxc:A, 6zxc:B, 6zxc:C, 6zxc:D, 6zxm:A, 6zxm:B, 6zxm:C, 6zxm:D, 6zxm:E, 6zxm:F
21 4h54:A 274 183 0.1614 0.2226 0.3333 9.59e-17 4h54:B, 3t9o:A, 3tvk:A
22 5m3c:B 426 165 0.1534 0.1362 0.3515 2.33e-16 5m3c:A
23 7e6g:A 264 160 0.1455 0.2083 0.3438 5.25e-15
24 6ttr:B 195 163 0.1349 0.2615 0.3129 1.56e-13 6ttr:A, 6tts:A, 6tts:B
25 3qyy:B 156 160 0.1455 0.3526 0.3438 1.64e-12 3qyy:A
26 4rnh:A 423 169 0.1534 0.1371 0.3432 6.95e-12
27 6khu:A 131 57 0.0423 0.1221 0.2807 0.015
28 6gjt:E 181 62 0.0556 0.1160 0.3387 0.33 6gjt:A, 6gjt:B, 6gjt:C, 6gjt:D, 6gjt:F
29 4v8l:D 2822 103 0.0767 0.0103 0.2816 0.43 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
30 6dcr:B 600 51 0.0503 0.0317 0.3725 1.2
31 3h8f:A 497 94 0.0767 0.0584 0.3085 1.8 3h8f:B, 3h8f:C, 3h8f:D, 3h8f:E, 3h8f:F, 3h8g:F, 3h8g:A, 3h8g:B, 3h8g:C, 3h8g:D, 3h8g:E
32 5d92:D 342 46 0.0344 0.0380 0.2826 3.7 5d91:A, 5d92:A, 5d92:B, 5d92:C
33 4ci0:C 280 25 0.0317 0.0429 0.4800 7.8 4omf:B, 3zfs:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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