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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSKTTFLKPVATGNQDLKDGGFAFPPTE
PLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNPDKDENSNYKYPAVYDDKDKKCHILYIAAQENNGPMFCFRPA
KDKSFQNYVYLSKNVVDNWEKVCPRKNLENAKFGLWVDGNCEDIPHVNEFSANDLFECNKLVFELSASDQPDRYKSHGKG
YNWGNYNRKTHKCEIFNVKPTCLINDKSYIATTALSHPIEVENNFP

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3srj:A 298 293 0.9371 0.8993 0.9147 0.0 3sri:A, 3srj:B, 4z09:A, 4z0d:A, 4z0e:A, 4z0f:A
2 6n87:A 314 315 0.9336 0.8503 0.8476 0.0
3 6n7q:A 266 282 0.8846 0.9511 0.8972 0.0
4 4apm:A 339 279 0.3671 0.3097 0.3763 4.53e-56
5 4yiv:A 374 321 0.3357 0.2567 0.2991 3.78e-33
6 5e6m:A 519 76 0.0664 0.0366 0.2500 2.4 4kr2:A, 4kr3:A
7 2atv:A 168 112 0.1119 0.1905 0.2857 4.2
8 4cu9:B 185 26 0.0420 0.0649 0.4615 5.1 4cu9:A
9 5m41:A 712 94 0.0909 0.0365 0.2766 5.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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