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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPSEG
LQLHLPQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCH
AEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPIARGQLRTKIES
GQGTIPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAMYQRISN
IEDLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRASRLCKHALYCRWMRVHGKVPSH
LLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQFSLT

The query sequence (length=454) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8e0f:B 454 454 1.0000 1.0000 1.0000 0.0 6d06:A, 6d06:D, 8e0f:A, 8e4x:A, 8e4x:B, 5ed1:A, 5ed1:D, 5ed2:A, 5ed2:D, 5hp2:A, 5hp2:D, 5hp3:A, 5hp3:D, 7kfn:A, 7kfn:D, 2l2k:B, 6vff:A, 6vff:B, 1zy7:A, 1zy7:B
2 2l3j:A 236 67 0.1432 0.2754 0.9701 1.78e-37 2l3c:A
3 2l3j:A 236 59 0.0771 0.1483 0.5932 1.97e-13 2l3c:A
4 5dv7:C 137 46 0.0661 0.2190 0.6522 3.90e-12
5 5dv7:C 137 59 0.0661 0.2190 0.5085 4.77e-11
6 1ekz:A 76 53 0.0396 0.2368 0.3396 4.96e-04
7 6sdw:A 177 64 0.0529 0.1356 0.3750 0.001 6htu:A, 6htu:B, 6htu:C, 6sdy:A
8 6sdw:A 177 54 0.0463 0.1186 0.3889 0.014 6htu:A, 6htu:B, 6htu:C, 6sdy:A
9 7zpk:C 233 65 0.0639 0.1245 0.4462 0.006 3adl:A, 5n8l:A, 5n8m:A
10 4kzk:A 301 82 0.0573 0.0864 0.3171 0.23
11 1di2:A 69 46 0.0352 0.2319 0.3478 0.37
12 9asp:C 92 48 0.0396 0.1957 0.3750 0.46
13 3a4t:A 258 85 0.0463 0.0814 0.2471 3.6 3a4t:B
14 8pcx:A 232 49 0.0396 0.0776 0.3673 4.3 8bjo:A, 8bxz:A, 8p6o:A, 8pc3:A, 8pc8:A, 8pdt:A, 8ped:A, 8qli:A, 8r43:A, 8rbn:A
15 4rdr:A 706 30 0.0286 0.0184 0.4333 4.6
16 9asp:B 250 61 0.0419 0.0760 0.3115 5.5 9asm:B, 9asn:B, 9asq:B
17 2nxp:A 149 37 0.0264 0.0805 0.3243 7.4 2nxp:B, 2nxp:C, 2nxp:D, 2nxp:E, 2nxp:F, 2nxp:G, 2nxp:H
18 8dfv:K 253 78 0.0463 0.0830 0.2692 8.0 8dg5:K
19 8dfv:K 253 72 0.0551 0.0988 0.3472 8.0 8dg5:K
20 6v5b:C 217 50 0.0374 0.0783 0.3400 8.4 6v5b:B, 6v5c:C, 6v5c:B
21 1yyk:A 221 53 0.0352 0.0724 0.3019 9.1 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
22 4rdt:A 635 34 0.0352 0.0252 0.4706 9.9 4rdt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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