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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NPTIIRARAPLRLGLAGGGTDVAPYADTFGGYVLNATIDRYAYAVIKTLTIPAVRFVSTDQQVEKHQLISEPLELNGTLN
LHKAVYNHMIRNYNHGKPIALELSTFCDAPAGSGLGSSSTLVVVMIKAFVELLNLPLDDYAIAQLAYRIERVDCGLAGGR
QDQYSATFGGFNFMEFYAAARTIVNPLRIKNWVLCELEASLVLFYTGVSRESAKIIQDQSDNVVSHKTAAIEAMHGIKRE
ALVMKEALLKGDFKAFVASMRLGWDNKKNSARTVSNAHIDEIYDAAIRAGAQAGKVSGAGGGGFMLFFVPTEKRMDLIRT
LGEYDGQVSNCHFTKNGTQAWRIAN

The query sequence (length=345) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ut4:A 345 345 1.0000 1.0000 1.0000 0.0 4ut4:B, 4utg:A, 4utg:B
2 4n3o:B 314 339 0.4551 0.5000 0.4631 8.77e-94
3 4hac:A 312 261 0.1971 0.2179 0.2605 1.19e-10 4hac:B, 6mde:A, 6mdf:A, 6mdf:B
4 1s4e:F 351 344 0.2522 0.2479 0.2529 9.21e-10 1s4e:A, 1s4e:B, 1s4e:C, 1s4e:D, 1s4e:E, 1s4e:H, 1s4e:I
5 2dei:A 350 350 0.2435 0.2400 0.2400 3.98e-08 2dej:A
6 8teb:A 306 245 0.1884 0.2124 0.2653 1.30e-07
7 2hfu:A 326 274 0.1855 0.1963 0.2336 2.67e-06
8 2a2d:A 448 40 0.0406 0.0312 0.3500 0.16 2a2c:A
9 2v2q:B 270 59 0.0522 0.0667 0.3051 0.72 2v2q:A, 2v2v:A, 2v2v:B, 2v2z:A, 2v2z:B, 2v34:A, 2v34:B, 2v8p:A, 2v8p:B, 2vf3:A, 2vf3:B
10 3gyy:D 311 39 0.0406 0.0450 0.3590 0.82 3gyy:A, 3gyy:B, 3gyy:C, 2vpn:A, 2vpn:B, 2vpo:A, 2vpo:B
11 5zz9:B 114 45 0.0406 0.1228 0.3111 4.4 1i7a:A, 1i7a:B, 1i7a:D, 5zz9:A, 5zz9:C
12 2r42:A 383 86 0.0754 0.0679 0.3023 6.3 1kvk:A
13 2aj4:A 509 37 0.0377 0.0255 0.3514 7.1 2aj4:B
14 7zpq:CA 1742 161 0.1014 0.0201 0.2174 8.6 7zrs:CA, 7zuw:CA
15 2v4j:A 436 46 0.0464 0.0367 0.3478 8.8 2v4j:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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