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BioLiP
>protein
NPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDSRAKEYAGVSKSAAALVDVLAWGSIGHIVAYYI
LATSSNGYDPK

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4y28:G 91 91 1.0000 1.0000 1.0000 1.82e-63
2 7wg5:AG 99 94 0.8571 0.7879 0.8298 2.31e-51 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
3 8wgh:G 98 95 0.8132 0.7551 0.7789 1.23e-47
4 3lw5:G 95 92 0.8022 0.7684 0.7935 2.99e-47 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
5 8bcv:G 94 93 0.8022 0.7766 0.7849 2.29e-46
6 4rku:G 84 85 0.7912 0.8571 0.8471 1.74e-45
7 5zji:G 97 93 0.7912 0.7423 0.7742 4.15e-45
8 6l35:G 98 95 0.6264 0.5816 0.6000 4.95e-37 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
9 7a4p:G 99 91 0.5055 0.4646 0.5055 2.92e-26 6zzx:G, 6zzy:G
10 7yca:G 95 87 0.4615 0.4421 0.4828 6.20e-24
11 7zq9:G 95 87 0.3297 0.3158 0.3448 1.36e-11 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
12 8cmo:G 93 89 0.2857 0.2796 0.2921 1.22e-08
13 7zqc:G 80 88 0.3187 0.3625 0.3295 6.60e-08 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
14 6ijo:G 70 85 0.2857 0.3714 0.3059 8.35e-07 7r3k:G
15 6sl5:G 101 91 0.3187 0.2871 0.3187 0.001
16 6igz:K 80 81 0.2967 0.3375 0.3333 0.050
17 8bcv:K 88 79 0.2747 0.2841 0.3165 0.49 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
18 3wy0:B 377 76 0.2418 0.0584 0.2895 1.1 3wxy:A, 3wxy:B, 3wy0:A
19 1xim:A 392 31 0.1429 0.0332 0.4194 1.1 1xim:B, 1xim:C, 1xim:D, 1xin:A, 1xin:B, 1xin:C, 1xin:D, 2xim:A, 2xim:B, 2xim:C, 2xim:D, 2xin:A, 2xin:B, 2xin:C, 2xin:D, 3xim:A, 3xim:B, 3xim:C, 3xim:D, 4xim:A, 4xim:B, 4xim:C, 4xim:D, 5xim:A, 5xim:B, 5xim:C, 5xim:D, 5xin:A, 5xin:B, 5xin:C, 5xin:D, 6xim:A, 6xim:B, 6xim:C, 6xim:D, 8xim:A, 8xim:B, 8xim:C, 8xim:D, 9xim:A, 9xim:B, 9xim:C, 9xim:D
20 7a4p:K 86 79 0.2747 0.2907 0.3165 1.9 6zzx:K, 6zzy:K
21 8b4l:C 311 51 0.1758 0.0514 0.3137 2.2 8b4l:E, 8b4l:A, 8b4l:B, 8b4l:D, 8b4l:F, 8b4m:B, 8b4m:D, 8b4m:E, 8b4m:F
22 4a42:A 127 14 0.1099 0.0787 0.7143 3.1 4a42:B
23 1did:A 393 36 0.1648 0.0382 0.4167 5.1 1did:B, 1die:A, 1die:B, 4xia:A, 4xia:B, 5xia:A, 5xia:B, 1xlb:A, 1xlb:B, 1xlc:A, 1xlc:B, 1xld:A, 1xld:B, 1xle:A, 1xle:B, 1xlf:A, 1xlf:B, 1xlg:A, 1xlg:B, 1xli:A, 1xli:B, 1xlj:A, 1xlj:B, 1xlk:A, 1xlk:B, 1xll:A, 1xll:B, 1xlm:A, 1xlm:B
24 5nd2:C 280 55 0.1868 0.0607 0.3091 6.9
25 5nd7:C 300 55 0.1868 0.0567 0.3091 7.0
26 5nd4:C 337 55 0.1868 0.0504 0.3091 7.1
27 8bjs:A 343 55 0.1868 0.0496 0.3091 7.1
28 2bwj:B 195 41 0.1209 0.0564 0.2683 7.3
29 7mqx:E 358 23 0.0989 0.0251 0.3913 7.9 1dtn:A, 4fp1:A, 4fp1:B, 4hnc:A, 4hnc:B, 4m6u:A, 4m6u:B, 1mdl:A, 1mdr:A, 1mns:A, 2mnr:A, 7mqx:A, 7mqx:B, 7mqx:C, 7mqx:D, 7mqx:F, 7mqx:G, 7mqx:H, 1mra:A, 3uxk:A, 3uxk:B, 3uxk:C, 3uxk:D, 3uxl:A, 3uxl:B, 3uxl:C, 3uxl:D, 6vim:A, 6vim:B, 6vim:C, 6vim:D, 6vim:E, 6vim:F, 6vim:G, 6vim:H, 4x2p:A
30 5odp:G 100 16 0.0879 0.0800 0.5000 9.3 5odp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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