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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NPSLRMKWAMCSNFPLALTKGDMANRIPLEYKGIQLKTNAEDIGTKGQMCSIAAVTWWNTYGPIGDTEGFERVYESFFLR
KMRLDN

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7z42:C 718 86 1.0000 0.1198 1.0000 9.56e-58
2 6qcs:C 742 86 1.0000 0.1159 1.0000 1.07e-57 8bdr:C, 8be0:C, 8bf5:C, 5efa:A, 5efc:A, 6f5o:C, 5m3j:C, 5msg:C, 4or4:A, 4or4:B, 4or6:A, 4or6:B, 4oro:A, 4oro:B, 4oro:C, 4oro:D, 4q46:A, 4q46:B, 6qct:C, 6qcv:C, 6qcw:C, 6qcx:C, 7r1f:C, 6t0w:C, 4wrt:C, 4wsa:C, 7z42:F, 7z43:CCC
3 6t2c:C 116 87 0.3953 0.2931 0.3908 1.47e-14
4 6evj:C 748 87 0.3953 0.0455 0.3908 3.02e-13 6evj:F, 6evk:C, 9f2r:C, 9f37:C, 6fhh:C, 6fhi:C, 5m3h:C, 6szu:C, 6szv:C, 6t0n:C, 6t0r:C, 6t0s:C, 6t0u:C, 6t0v:C, 6tw1:C, 4wsb:C
5 8bek:C 737 84 0.3605 0.0421 0.3690 1.31e-12 7as0:A, 7as1:A, 7as2:A, 7as3:A, 5buh:A, 4cb4:A, 4cb5:A, 4cb6:A, 4cb6:B, 4cb7:B, 5eg7:A, 4eqk:A, 4es5:A, 4es5:B, 4es5:C, 4es5:D, 6euv:A, 6euv:I, 6euv:C, 6euv:F, 6euw:A, 6euy:A, 6euy:B, 6euy:C, 5f79:A, 5fmm:A, 5fmq:A, 8h69:C, 5jun:A, 5jur:A, 4nce:A, 4ncm:A, 7nha:C, 7nhc:C, 7nhx:C, 7ni0:C, 7nik:C, 7nil:C, 7nir:C, 7nis:C, 7nj3:C, 7nj4:C, 7nj5:C, 7nj7:C, 7nk1:C, 7nk2:C, 7nk4:C, 7nk6:C, 7nk8:C, 7nka:C, 7nkc:C, 7nki:C, 7nkr:C, 4p1u:A, 8pm0:C, 8pnp:C, 8pnq:C, 7qtl:C, 7r0e:C, 8r3k:C, 8r3l:C, 8r60:C, 8r65:C, 6rr7:C, 6s5v:AAAA, 6s5v:ABAA, 2vqz:A, 2vqz:B, 2vqz:D, 2vqz:E, 2vqz:F, 3wi1:A, 5wl0:A, 7xme:A, 7xme:B, 7xme:C, 7xme:D, 4yd0:A
6 6xzd:CP1 772 86 0.3605 0.0402 0.3605 3.23e-11
7 6kuk:C 249 88 0.4070 0.1406 0.3977 7.97e-11 6kup:C
8 8z8x:C 400 62 0.1977 0.0425 0.2742 0.005
9 8z97:C 552 62 0.1977 0.0308 0.2742 0.005
10 8z9h:C 748 62 0.1977 0.0227 0.2742 0.005 8z90:C, 8z9r:C
11 6x35:B 3801 87 0.2558 0.0058 0.2529 1.1 6x35:E, 6x35:H, 6x35:K
12 5mqr:A 1082 49 0.1860 0.0148 0.3265 2.2 5mqs:A
13 5h1s:J 53 41 0.1512 0.2453 0.3171 3.2 6eri:AH, 5mlc:I, 5mmi:H, 5mmm:H, 5x8p:H, 5x8t:H
14 4z02:A 119 47 0.1512 0.1092 0.2766 3.6 7lh9:B
15 6y60:AAA 260 48 0.1744 0.0577 0.3125 3.7 6y60:DDD, 6y60:EEE, 6y60:FFF, 6y60:HHH, 6y60:III, 6y60:JJJ, 6y60:BBB, 6y60:CCC, 6y60:GGG
16 5dk2:E 159 35 0.1628 0.0881 0.4000 4.7
17 4fyg:A 743 56 0.1744 0.0202 0.2679 7.5 4fye:A, 4fyf:A
18 6x32:B 3798 77 0.2326 0.0053 0.2597 8.6 6x32:E, 6x32:H, 6x32:K
19 6x33:B 3816 77 0.2326 0.0052 0.2597 8.6 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K
20 6w1n:B 3719 77 0.2326 0.0054 0.2597 8.8 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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