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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQ
AKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKA
NLISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMSWPVVGQFSSVGSLG
ADESKWLCSEFKESMLTLGVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIK
TYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSALGLDSFKVKQKFATFPVPYDLPPELYGS
KDRPWIWNIPYVKAPDTHGNMWVPS

The query sequence (length=425) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8uzv:A 442 442 0.9929 0.9548 0.9548 0.0 9b3b:A, 9b3b:B, 8cvq:A, 8cvq:B, 8cw2:A, 8cw2:B, 6dhu:A, 6dhu:B, 6die:A, 6die:B, 6dih:A, 6dih:B, 6dim:A, 6dim:B, 6djd:A, 6djd:B, 6dje:A, 6dje:B, 6djf:A, 6djf:B, 6djg:A, 6djg:B, 6djh:A, 6djh:B, 6dji:A, 6dji:B, 6djj:A, 6djj:B, 6mj5:A, 6mj5:B, 1mu7:A, 1mu7:B, 1mu9:A, 1mu9:B, 6myz:A, 6mz0:A, 6mz0:B, 6n0d:A, 6n0d:B, 6n0n:A, 6n0n:B, 6n0o:A, 6n0o:B, 6n0r:A, 6n0r:B, 6n17:A, 6n17:B, 6n19:A, 6n19:B, 1nop:A, 1nop:B, 5nw9:A, 5nwa:A, 1rff:A, 1rff:B, 1rfi:A, 1rfi:B, 1rg1:A, 1rg1:B, 1rg2:A, 1rg2:B, 1rgt:A, 1rgt:B, 1rgu:A, 1rgu:B, 1rh0:A, 1rh0:B, 7ufy:A, 7ufy:B, 7ufz:A, 7ufz:B, 8uv1:A, 8uv1:B, 8uzv:B, 8uzz:A, 8uzz:B, 8v0b:A, 8v0b:B, 8v0c:A, 8v0c:B, 6w4r:A, 6w4r:B, 6w7j:A, 6w7j:B, 6w7k:A, 6w7k:B, 6w7l:A, 6w7l:B
2 1g4u:S 360 97 0.0518 0.0611 0.2268 0.43
3 1u05:A 243 56 0.0400 0.0700 0.3036 1.8 7f3v:A, 7f3v:B, 7f3v:C, 7f3v:D, 1u05:B, 7w1g:A, 7w1g:B, 7w1g:C, 7w1g:D, 1xaf:A, 1xaf:B
4 7pd3:z 311 109 0.0612 0.0836 0.2385 3.3 8pk0:z, 8qsj:z
5 7e78:A 562 70 0.0565 0.0427 0.3429 5.2 7e78:C
6 2wtn:B 250 48 0.0400 0.0680 0.3542 6.5 2wtn:A
7 4b2g:B 572 59 0.0447 0.0332 0.3220 7.1 4b2g:A
8 6a8x:A 203 48 0.0329 0.0690 0.2917 7.3 6a8x:B, 6a98:A, 6a98:B, 6a98:C, 6a98:D, 6a99:A, 6a99:B, 6a99:C, 6a99:D, 6a9f:A, 6a9f:B, 6a9f:C, 6a9f:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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