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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYF
AEMVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSL

The query sequence (length=145) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8v83:J 151 145 1.0000 0.9603 1.0000 3.38e-104 6elz:J, 6em5:J, 7nac:J, 7ohr:J, 7r7a:J, 7r7c:J, 8v84:J, 8v87:J
2 8i9t:CU 178 147 0.5103 0.4157 0.5034 4.31e-32 8i9p:CU, 8i9r:CU, 8i9v:CU, 8i9w:CU, 8i9x:CU, 8i9y:CU, 8i9z:CU, 8ia0:CU
3 8fkr:SN 173 109 0.3517 0.2948 0.4679 3.54e-24 8fks:SN, 8fkt:SN, 8fku:SN, 8fkv:SN, 8fkw:SN, 8fkx:SN, 8fky:SN
4 8fkp:SN 168 86 0.2690 0.2321 0.4535 2.08e-17 8fkq:SN
5 6nag:A 351 52 0.1310 0.0541 0.3654 0.23 5l20:B
6 6dfl:A 241 28 0.0897 0.0539 0.4643 1.3
7 4jta:Q 363 78 0.1793 0.0716 0.3333 1.8 4jtc:H, 4jtd:H, 2r9r:H
8 5xe0:A 457 52 0.0966 0.0306 0.2692 2.4 5zit:A
9 6ezn:F 650 69 0.1241 0.0277 0.2609 2.4 8agb:A, 8age:A, 6c26:A, 7oci:F
10 8agc:A 697 69 0.1241 0.0258 0.2609 2.5
11 6cul:A 267 49 0.1310 0.0712 0.3878 2.6 6cul:B, 6cul:C, 6cul:D, 6cul:E, 6cul:H, 6cul:F, 6cul:G
12 8us3:A 552 44 0.1103 0.0290 0.3636 3.0 8us1:A
13 5wie:B 390 50 0.1172 0.0436 0.3400 3.1 4jta:B, 4jtc:B, 4jtd:B, 3lnm:B, 2r9r:B
14 8ch6:V 285 46 0.0966 0.0491 0.3043 5.0 7qtt:V
15 5wie:H 328 50 0.1172 0.0518 0.3400 5.2 3lnm:D
16 8i0s:Y 320 46 0.0966 0.0437 0.3043 6.2 8i0t:Y, 8i0u:Y, 8i0v:Y
17 5dw8:A 260 49 0.0966 0.0538 0.2857 8.4 5dw8:B, 5j16:A, 5j16:B, 5j16:C, 5j16:D
18 8arn:A 509 38 0.1034 0.0295 0.3947 8.5 8are:A, 8arn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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