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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NNRYSFIGGRTGQWQVVKIRNVLGPGLQLVEKVNILNGAVAEIPLDSAWRLQGFASNIRYAIRTELEALQAVQPMLNRAE
AILAVLIPIKKSAQWWEMAQDERRDIFERESHHTAVGLEYLPGVARRLLHCRDLGEEFDFLTWFEFAPEHSSAFNELLLR
MRASKEWEYVEREVEVWLKRL

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ati:A 182 181 0.9945 0.9890 0.9945 2.23e-131 7asb:A, 7asb:B, 7ati:B, 5k8z:A, 5k8z:B, 5k8z:C, 5k8z:D, 5k90:A, 5k90:B, 5k90:C, 5k90:D, 5k91:A, 5k91:B, 5k91:C, 5k91:D, 5mau:A, 5mau:B, 5nku:A, 5nku:B, 5nkv:A, 5nkv:B, 7ou5:A, 7ou5:B, 7ou7:A, 7ou7:B, 7ou9:A, 7ou9:B, 7oua:A, 7oua:B, 7ouy:A, 7ouy:B, 7ouy:C, 7ouy:D, 7owi:A, 7owi:B, 7owi:C, 7owi:D, 8quu:A, 8quu:B, 8quv:A, 8quv:B, 8quz:A, 8quz:B, 8qvb:A, 8qvb:B
2 3qpi:A 173 175 0.4972 0.5202 0.5143 3.91e-61 3qpi:B
3 3q08:A 241 85 0.1878 0.1411 0.4000 2.41e-11 3q08:B, 3q08:C, 3q08:D, 3q08:E, 3q08:F, 3q08:G, 3q08:H, 3q08:I, 3q08:J, 3q08:K, 3q08:L, 3q08:M, 3q08:N, 3q08:O, 3q08:P, 3q08:Q, 3q08:R, 3q08:S, 3q08:T, 3q09:A, 3q09:B, 3q09:C, 3q09:D, 3q09:E, 3q09:F, 3q09:G, 3q09:H, 3q09:I, 3q09:J, 3q09:K, 3q09:L, 3q09:M, 3q09:N, 3q09:O, 3q09:P, 3q09:Q, 3q09:R, 3q09:S, 3q09:T, 2vxh:A, 2vxh:B, 2vxh:C, 2vxh:D, 2vxh:E, 2vxh:F
4 5a13:B 245 77 0.1713 0.1265 0.4026 5.82e-10 5a12:A, 5a12:B, 5a12:C, 5a12:D, 5a12:E, 5a13:A, 5a13:C, 5a13:D, 5a13:E, 5a13:F, 5a13:G, 5a13:H, 5a13:I, 5a13:J
5 4m05:B 240 89 0.1713 0.1292 0.3483 6.89e-09 4m05:A, 4m05:C, 4m05:D, 4m05:E, 4m06:A, 4m06:B, 4m06:C, 4m06:D, 4m06:E, 4m07:A, 4m07:B, 4m07:C, 4m07:D, 4m07:E, 4m08:A, 4m08:B, 4m08:C, 4m08:D, 4m08:E, 4m09:A, 4m09:B, 4m09:C, 4m09:D, 4m09:E, 3nn1:A, 3nn1:B, 3nn1:C, 3nn1:D, 3nn1:E, 3nn2:A, 3nn2:B, 3nn2:C, 3nn2:D, 3nn2:E, 3nn3:A, 3nn3:B, 3nn3:C, 3nn3:D, 3nn3:E, 3nn4:A, 3nn4:B, 3nn4:C, 3nn4:D, 3nn4:E
6 4kxf:P 866 54 0.1105 0.0231 0.3704 0.010
7 4kxf:K 904 54 0.1105 0.0221 0.3704 0.011 4kxf:B, 4kxf:D, 4kxf:F, 4kxf:H, 4kxf:L, 4kxf:N
8 8c4t:A 1268 47 0.0884 0.0126 0.3404 1.1
9 7cbb:A 576 58 0.0939 0.0295 0.2931 1.8 7cbb:B
10 8i0w:J 571 102 0.1823 0.0578 0.3235 3.1 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J
11 8vby:A 553 71 0.1215 0.0398 0.3099 3.4 9eo4:B, 8y2d:A, 8y2e:A, 8y2f:A, 8y2g:A
12 4mh1:B 514 42 0.0608 0.0214 0.2619 4.6
13 8ov8:A 349 50 0.0829 0.0430 0.3000 9.3 8ov8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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