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BioLiP
>protein
NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1puf:A 77 77 1.0000 1.0000 1.0000 7.33e-53 2lp0:A
2 5zjr:A 64 58 0.5714 0.6875 0.7586 2.00e-25 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
3 1ahd:P 68 64 0.5455 0.6176 0.6562 3.73e-23
4 2r5z:A 75 59 0.5325 0.5467 0.6949 2.86e-22 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
5 2h1k:B 60 57 0.4935 0.6333 0.6667 4.42e-21 2h1k:A
6 4uus:A 67 54 0.5065 0.5821 0.7222 6.08e-21 4uus:E
7 4cyc:A 66 54 0.5065 0.5909 0.7222 8.78e-20 1b8i:A
8 6es3:K 72 63 0.4935 0.5278 0.6032 4.70e-19 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
9 8eml:A 58 54 0.4545 0.6034 0.6481 1.95e-18 8eml:B
10 2ld5:A 67 58 0.4286 0.4925 0.5690 3.58e-18
11 5eea:G 63 58 0.3896 0.4762 0.5172 2.28e-17 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
12 1b72:A 68 54 0.4545 0.5147 0.6481 8.79e-17
13 2me6:A 71 59 0.4026 0.4366 0.5254 8.23e-15
14 1ig7:A 58 58 0.3896 0.5172 0.5172 2.20e-13
15 4rdu:D 62 62 0.3766 0.4677 0.4677 7.74e-12 4rdu:A, 4xrs:I, 4xrs:G
16 1jgg:A 57 54 0.3636 0.4912 0.5185 1.01e-11 1jgg:B
17 1nk2:P 77 63 0.3766 0.3766 0.4603 1.22e-11 1nk3:P
18 8pna:A 67 63 0.3506 0.4030 0.4286 4.24e-11 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
19 3rkq:A 58 56 0.3506 0.4655 0.4821 2.71e-10 3rkq:B
20 3a01:A 78 54 0.3377 0.3333 0.4815 1.32e-09 3a01:E
21 1zq3:P 68 64 0.3636 0.4118 0.4375 2.62e-09
22 2lkx:A 68 59 0.3377 0.3824 0.4407 5.15e-09
23 4qtr:C 57 54 0.2987 0.4035 0.4259 8.35e-09 4qtr:A, 4qtr:B, 4qtr:D
24 6m3d:C 108 64 0.3247 0.2315 0.3906 1.47e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
25 6m3d:C 108 48 0.2597 0.1852 0.4167 9.28e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
26 5flv:M 229 51 0.3117 0.1048 0.4706 6.16e-08 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
27 1fjl:A 65 57 0.2857 0.3385 0.3860 2.59e-07 1fjl:B, 1fjl:C
28 3a01:F 61 60 0.3247 0.4098 0.4167 4.77e-07 3a01:B, 3lnq:A
29 8osb:E 62 54 0.2987 0.3710 0.4259 6.33e-06
30 4rbo:A 55 51 0.2597 0.3636 0.3922 9.40e-06 4rbo:D
31 3cmy:A 60 57 0.2857 0.3667 0.3860 1.72e-05
32 6e8c:A 135 54 0.2727 0.1556 0.3889 9.41e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 48 0.2078 0.1185 0.3333 0.022 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 8ejo:A 56 55 0.2468 0.3393 0.3455 1.43e-04 8ejo:B, 8ejp:A, 8ejp:B
35 9b8u:B 66 50 0.2597 0.3030 0.4000 2.00e-04 9b8u:A, 9b8u:C, 9b8u:D
36 1gt0:C 137 69 0.3247 0.1825 0.3623 2.14e-04 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
37 8ik5:C 67 66 0.2857 0.3284 0.3333 0.004 8ike:C, 8ilw:C
38 1lfu:P 82 61 0.2727 0.2561 0.3443 0.004 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
39 1le8:A 53 42 0.2078 0.3019 0.3810 0.005 1akh:A, 1yrn:A
40 3d1n:I 150 56 0.2468 0.1267 0.3393 0.022 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
41 5hod:A 61 60 0.2208 0.2787 0.2833 0.20 5hod:D
42 4egc:A 539 40 0.1818 0.0260 0.3500 0.23
43 3qp6:A 258 71 0.2468 0.0736 0.2676 0.38 3qp8:A, 3qp8:B, 3qp8:C, 3qp8:D
44 5wc9:A 136 26 0.1429 0.0809 0.4231 1.8 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
45 3qp5:A 251 71 0.2338 0.0717 0.2535 2.8 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
46 5c2v:D 770 31 0.1169 0.0117 0.2903 3.3 5c2v:A, 5c2w:A, 5c2w:D
47 8g8e:X 140 43 0.2078 0.1143 0.3721 4.0 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
48 3l1p:A 147 25 0.1429 0.0748 0.4400 4.1 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
49 7xrc:C 134 45 0.1948 0.1119 0.3333 4.3 2xsd:C
50 8bx1:A 127 24 0.1429 0.0866 0.4583 4.9
51 8kgb:C 245 55 0.2078 0.0653 0.2909 6.7 8kgb:A, 8kgb:B, 8kgb:D, 8x35:A, 8x35:B, 8x36:A, 8x36:B, 8x37:A, 8x37:B
52 8y8b:A 271 37 0.1299 0.0369 0.2703 7.0 8y8j:A
53 7bsx:A 305 30 0.1169 0.0295 0.3000 7.0 7bsx:B, 7bsx:C, 7bsx:D, 7bsx:E, 7bsx:F, 7bsx:G, 7bsx:H
54 2j3e:A 249 46 0.2338 0.0723 0.3913 8.0 3bb3:A, 3bb4:A, 3def:A
55 6z1p:Bu 559 40 0.2078 0.0286 0.4000 8.0
56 5t8u:B 336 38 0.2078 0.0476 0.4211 8.0 5t8u:A
57 8r3g:A 335 32 0.1169 0.0269 0.2812 8.3 3bxf:A, 3bxg:A, 3bxg:B, 3bxh:A, 3bxh:B, 2okg:B, 7oyk:BBB, 7oyk:AAA, 7oyk:CCC, 7oyk:DDD, 8r3g:B, 8r3g:D, 8r3g:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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