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BioLiP
>protein
NNNQIGENKEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLSGAFLDDNELTAKIEKRI
SSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFE
YFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK

The query sequence (length=197) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5v7y:A 207 207 0.9645 0.9179 0.9179 3.33e-139 5hv0:A, 5hv0:B, 5hv4:A, 5iav:A, 5iav:B, 5iax:A, 5iax:B, 5v7y:B, 5v7y:D, 5v7y:C
2 2jig:B 195 177 0.3350 0.3385 0.3729 3.04e-33 3gze:B, 3gze:D
3 2jig:A 216 196 0.3401 0.3102 0.3418 9.67e-33 3gze:A, 3gze:C
4 5c5u:B 190 167 0.2893 0.3000 0.3413 1.63e-20 5c5t:A, 5c5t:B, 5c5u:A
5 6tp5:A 370 147 0.2183 0.1162 0.2925 6.42e-11 6tp5:B
6 6tp5:A 370 46 0.0761 0.0405 0.3261 7.7 6tp5:B
7 3jvt:C 156 80 0.1421 0.1795 0.3500 0.44 1b7t:Z, 1dfk:Z, 1dfl:Z, 1dfl:X, 2ec6:C, 1kk7:Z, 1kk8:C, 1kqm:C, 1kwo:C, 1l2o:C, 2os8:C, 2otg:C, 3pn7:C, 3pn7:F, 1qvi:Z, 1s5g:Z, 1scm:C, 1sr6:C, 3ts5:C, 3ts5:F, 3tuy:C, 3tuy:F, 1wdc:C
8 7naf:y 167 66 0.1117 0.1317 0.3333 1.9
9 6jdc:A 269 120 0.1624 0.1190 0.2667 4.5
10 6jdb:A 290 83 0.1269 0.0862 0.3012 4.9
11 8cip:A 665 59 0.0914 0.0271 0.3051 6.4 8cip:B, 8cip:C, 8cip:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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