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BioLiP
>protein
NNKPLNTLISATGLWMSRTGTIHKIKHHEVSRSKIYIEMACGDHLVVNNSRSSRPARALRYHKYRKTCKRCRVSDEDLNK
FLTK

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ud5:A 86 84 0.9524 0.9302 0.9524 8.27e-56 5ud5:B, 5v6x:A, 5v6x:B
2 7mqa:LY 95 55 0.2381 0.2105 0.3636 0.37
3 8rfh:A 730 37 0.1905 0.0219 0.4324 1.8 8rfh:B
4 5odu:A 121 43 0.1667 0.1157 0.3256 2.1 5odu:B, 5odu:C, 5odu:D, 5odu:E, 5odu:F, 5odu:G, 5odu:H, 5ofi:C, 5ofi:A, 5ofi:B, 5ofi:D, 5ofi:E, 5ofi:F, 5ofi:G, 5ofi:H, 5ofx:A, 5ofx:B, 5ofx:C, 5ofx:D, 5ofx:E, 5ofx:F, 5ofx:H, 5ofx:G
5 5gyn:A 295 19 0.1190 0.0339 0.5263 4.2 5aes:A, 5aes:B, 4bx0:A, 4bx2:A, 4bx2:B, 4bx3:A, 4bx3:B, 2cfr:A, 2cfs:A, 2cft:A, 9em1:A, 2oyc:A, 2p27:A, 2p69:A, 8qfw:A, 8qfw:B, 8s8a:A
6 4bkm:A 304 19 0.1190 0.0329 0.5263 4.2 4bkm:B, 4bkm:C, 4bkm:D
7 3da1:A 496 44 0.1429 0.0242 0.2727 4.6
8 1gwe:A 498 34 0.1190 0.0201 0.2941 6.9 1gwf:A, 1gwh:A, 1hbz:A
9 7a5f:K3 177 34 0.1429 0.0678 0.3529 7.3 7a5g:K3, 7a5h:K, 7a5i:K3, 7a5j:K, 7a5k:K3, 5aj4:BN, 8any:K, 4ce4:N, 6gaw:BN, 6gb2:BN, 6i9r:K, 3j7y:K, 3j9m:K, 8k2a:LM, 8k2b:LM, 7l08:K, 7l20:K, 7nqh:BN, 7nql:BN, 7nsh:BN, 7nsi:BN, 7nsj:BN, 6nu2:K, 6nu3:K, 7o9k:K, 7o9m:K, 7odr:K, 7ods:K, 7odt:K, 7of0:K, 7of2:K, 7of3:K, 7of4:K, 7of5:K, 7of6:K, 7of7:K, 7og4:XK, 7oi6:K, 7oi7:K, 7oi8:K, 7oi9:K, 7oia:K, 7oib:K, 7oic:K, 7oid:K, 7oie:K, 8oin:BR, 8oiq:BR, 8oir:BR, 8oit:BR, 5ool:K, 5oom:K, 7pd3:K, 8pk0:K, 7po4:K, 7qh6:K, 7qh7:K, 7qi4:K, 7qi5:K, 7qi6:K, 8qsj:K, 8qu1:K, 8qu5:K, 4v19:N, 6vlz:K, 6vmi:K, 8xt0:LM, 8xt1:LM, 8xt2:LM, 8xt3:LM, 6ydp:BN, 6ydw:BN, 6zm5:K, 6zm6:K, 6zs9:XK, 6zsa:XK, 6zsb:XK, 6zsc:XK, 6zsd:XK, 6zse:XK, 6zsg:XK
10 8p4e:O 695 48 0.1548 0.0187 0.2708 8.5 4n48:A, 4n48:B, 4n49:A, 8p4f:O
11 1eii:A 134 16 0.0833 0.0522 0.4375 9.3
12 6fly:A 144 28 0.1310 0.0764 0.3929 9.4 6fly:B, 6flz:A, 6flz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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