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BioLiP
>protein
NNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKTE

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3wuv:Q 62 46 1.0000 0.7419 1.0000 3.68e-28 3e1r:A, 3e1r:B, 3wut:A, 3wut:B, 3wut:D, 3wut:E, 3wut:G, 3wut:H, 3wut:J, 3wut:K, 3wuu:A, 3wuu:B, 3wuu:D, 3wuu:E, 3wuu:J, 3wuu:K, 3wuu:G, 3wuu:H, 3wuv:A, 3wuv:B, 3wuv:D, 3wuv:E, 3wuv:G, 3wuv:H, 3wuv:J, 3wuv:K, 3wuv:M, 3wuv:N, 3wuv:P
2 2wys:B 516 32 0.2609 0.0233 0.3750 0.73 2w5f:A, 2w5f:B, 2wys:A, 2wze:A, 2wze:B
3 8pv6:CR 516 15 0.1522 0.0136 0.4667 2.5 8pv8:CR
4 8pv4:CR 390 18 0.1957 0.0231 0.5000 3.1
5 6vlz:Q 240 34 0.2826 0.0542 0.3824 3.8 7a5f:Q3, 7a5g:Q3, 7a5h:Q, 7a5i:Q3, 7a5j:Q, 7a5k:Q3, 8any:Q, 6i9r:Q, 3j7y:Q, 3j9m:Q, 8k2a:LS, 8k2b:LS, 7l08:Q, 7l20:Q, 6nu2:Q, 6nu3:Q, 7o9k:Q, 7o9m:Q, 7odr:Q, 7ods:Q, 7odt:Q, 7of0:Q, 7of2:Q, 7of3:Q, 7of4:Q, 7of5:Q, 7of6:Q, 7of7:Q, 7og4:XQ, 7oi7:Q, 7oi8:Q, 7oi9:Q, 7oia:Q, 7oib:Q, 7oic:Q, 7oid:Q, 7oie:Q, 8oir:BX, 8oit:BX, 5ool:Q, 5oom:Q, 7pd3:Q, 8pk0:Q, 7po4:Q, 7qh6:Q, 7qh7:Q, 7qi4:Q, 7qi5:Q, 7qi6:Q, 8qsj:Q, 8qu1:Q, 8qu5:Q, 6vmi:Q, 8xt0:LS, 8xt1:LS, 8xt2:LS, 8xt3:LS, 6zm5:Q, 6zm6:Q, 6zs9:XQ, 6zsa:XQ, 6zsb:XQ, 6zsc:XQ, 6zsd:XQ, 6zse:XQ, 6zsg:XQ
6 6l2c:A 402 40 0.2609 0.0299 0.3000 4.5 6l2c:B, 6l2c:C, 6l2c:D
7 7x4y:E 459 37 0.2391 0.0240 0.2973 5.9 7x4l:A, 7x4l:F, 7x4l:B, 7x4l:E, 7x4l:C, 7x4l:D, 7x4y:A, 7x4y:C, 7x4y:B, 7x4y:D, 7x4y:F, 7x51:A, 7x51:B, 7x51:C, 7x51:D, 7x51:F, 7x51:E, 7x52:A, 7x52:C, 7x52:B, 7x52:E, 7x52:D, 7x52:F
8 4qhz:C 240 23 0.1957 0.0375 0.3913 6.1 4qhz:A, 4qhz:B, 4qhz:D
9 8wgh:H 90 33 0.2391 0.1222 0.3333 6.6
10 2x5d:D 380 27 0.2826 0.0342 0.4815 7.1 2x5d:A
11 6jon:A 280 26 0.1739 0.0286 0.3077 7.5 6jop:A, 6joq:A, 6k9a:A, 7rr3:A, 7rr4:A
12 7ea4:A 762 32 0.2174 0.0131 0.3125 7.6 7ea4:B, 7eby:A, 7eby:B, 7eby:C, 7eby:D, 7eby:E, 7eby:F
13 7pub:Cr 267 25 0.1957 0.0337 0.3600 7.7 6hiv:Cr, 6hiw:Cr, 6hiy:Cr

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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