BioLiP

>protein
NNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFW
WADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGF
KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDV
AVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDF
DDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTITEPTPTFS
ACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTEL
PGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPKL

The query sequence (length=534) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	1os1:A	537	537	1.0000	0.9944	0.9944	0.0	1aq2:A, 6asi:A, 6asm:A, 6asn:A, 6at2:A, 6at3:A, 6at3:B, 6at4:A, 6at4:B, 1ayl:A, 6com:A, 6crt:A, 1k3c:A, 1k3d:A, 2olq:A, 2olr:A, 2pxz:X, 2py7:X, 6v2l:A, 6v2m:A, 6v2n:A
2	1ylh:A	524	527	0.7472	0.7615	0.7571	0.0
3	1ytm:A	517	516	0.6498	0.6712	0.6725	0.0	1ytm:B
4	1xkv:B	519	537	0.4682	0.4817	0.4655	3.22e-161	1j3b:A, 1j3b:B, 2pc9:A, 2pc9:B, 2pc9:C, 2pc9:D, 1xkv:A
5	2fah:C	608	170	0.0861	0.0757	0.2706	0.23	2faf:A, 2faf:B, 2fah:D, 2fah:A, 2fah:B, 2qzy:A, 2qzy:B
6	2v1u:A	382	41	0.0318	0.0445	0.4146	0.57
7	1ae1:B	258	41	0.0318	0.0659	0.4146	0.65	1ae1:A
8	8wcf:A	160	58	0.0318	0.1062	0.2931	1.4
9	5jmd:A	646	70	0.0337	0.0279	0.2571	1.7	5jmf:A
10	6c6b:B	199	41	0.0262	0.0704	0.3415	2.7	6c6b:A, 6c6b:C, 6c6b:D, 6c6b:E, 6c6b:F
11	8cub:C	588	80	0.0468	0.0425	0.3125	2.9	8cub:A, 7r8a:A, 7r8b:A
12	5g0y:B	377	106	0.0543	0.0769	0.2736	4.7	5g0x:A, 5g0x:C, 5g0y:A, 5g10:A, 5g10:B, 5g11:A, 5g11:B, 5g12:A, 5g12:B, 5g13:A, 5g13:B, 5li3:A, 5li3:B

[Back]