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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYP
LTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIN
MDNTQRQYEAERNKANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLN
DSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVL
TAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSL
LLEEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGRKVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVT
NLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFN
RLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLA
KITESSSTKEDLLRLKKQRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLS
FILDHVFIEQDDEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCA
KTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFLKTREAIAMLHKDGIEFAFKAFLDILSEFSSKLLRQD
KRTVYVYLEKF

The query sequence (length=891) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zjs:A 929 906 1.0000 0.9591 0.9834 0.0 8k4d:A, 6qnx:A, 7zjs:C
2 7w1m:D 967 943 0.8081 0.7446 0.7635 0.0 5qsm:A, 5qso:A, 5qsp:A, 5qsq:A, 5qsr:A, 5qss:A, 5qst:C, 5qsu:C, 5qsv:D, 5qsw:C, 5qsw:D, 5qsx:C, 5qsx:D, 5qsz:A, 6rrc:C, 6rrc:A
3 6wg3:D 932 913 0.8036 0.7682 0.7842 0.0 5qsn:B, 5qsq:B, 5qsr:B, 5qsy:B, 6rrk:A, 6rrk:B
4 5qsw:B 298 312 0.2963 0.8859 0.8462 0.0 5qsw:A, 5qsx:B
5 6h8q:A 879 328 0.0999 0.1013 0.2713 2.80e-22 6h8q:B
6 5hdm:A 428 147 0.0382 0.0794 0.2313 0.65 5hdm:B
7 6jpk:A 409 71 0.0180 0.0391 0.2254 3.3 6jpk:B
8 8ro0:J 574 60 0.0157 0.0244 0.2333 5.5 8ro1:J
9 6b4o:A 451 33 0.0180 0.0355 0.4848 7.9 6b4o:B, 6b4o:C, 6b4o:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218