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BioLiP
>protein
NMFKSKHKLDFSLVSMDQRGKHILGYADAELVNMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRYQKKDGEWQWLQT
SSRLVYKNSKPDFVICTHRQLMDEEGHDLLGKR

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vnh:B 113 113 1.0000 1.0000 1.0000 2.17e-82 7vnh:A
2 7zub:D 157 113 0.4690 0.3376 0.4690 3.29e-38 8qmo:D
3 8osk:M 316 98 0.3274 0.1171 0.3776 1.58e-20 4h10:B, 8osl:M, 8osl:O
4 4xt2:A 116 105 0.2655 0.2586 0.2857 7.40e-11
5 4zpk:B 321 96 0.2478 0.0872 0.2917 1.99e-09 8ck3:A, 8ck4:A, 8ck8:A, 6czw:A, 6d09:A, 6d0b:A, 6e3s:B, 6e3t:B, 6e3u:B, 3f1o:A, 4ghi:A, 4gs9:A, 3h7w:A, 3h82:A, 5tbm:A, 5ufp:A, 7w80:B, 6x21:A, 6x28:A, 6x2h:A, 6x37:A, 6x3d:A, 4xt2:C, 4zqd:B
6 7v7w:B 288 96 0.2478 0.0972 0.2917 2.94e-09
7 8osl:N 290 79 0.2212 0.0862 0.3165 4.38e-09 4h10:A, 8osk:N, 8osl:P
8 7xi4:A 283 100 0.2389 0.0954 0.2700 2.66e-08 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
9 4zpr:B 279 96 0.2389 0.0968 0.2812 5.13e-08
10 7xi3:A 287 100 0.2389 0.0941 0.2700 2.29e-07
11 7xi3:B 314 79 0.2301 0.0828 0.3291 2.99e-07 7xhv:B, 7xi4:B
12 5sy7:B 276 83 0.1681 0.0688 0.2289 6.15e-06
13 4zpr:A 235 99 0.2124 0.1021 0.2424 0.039
14 6ph4:B 460 65 0.1947 0.0478 0.3385 0.23 5epv:A, 5epv:B, 5epv:C, 5epv:D, 6ph2:A, 6ph2:B, 6ph2:C, 6ph2:D, 6ph3:A, 6ph3:B, 6ph3:C, 6ph3:D, 6ph4:A, 6pps:A, 6pps:B, 6pps:C, 6pps:D, 3t50:A, 3t50:B
15 5aj4:Bh 289 28 0.0885 0.0346 0.3571 3.1 4ce4:h, 6gaw:Bh, 6gb2:Bh, 7nqh:Bh, 7nql:Bh, 7nsh:Bh, 7nsi:Bh, 7nsj:Bh, 8oin:Bt, 8oiq:Bt, 7qh7:c, 6ydp:Bh, 6ydw:Bh
16 5y7w:A 125 58 0.1416 0.1280 0.2759 4.2 5nwx:A, 1oj5:A, 5y7w:B
17 3qwb:A 330 23 0.0796 0.0273 0.3913 5.5 3qwb:B, 3qwb:C, 3qwb:D
18 5mj6:A 870 22 0.0973 0.0126 0.5000 6.5 5c97:A, 5c97:B, 8cgp:A, 8cgp:B, 8cgw:A, 8cgw:B, 5mj6:B, 8p0i:A, 8p0i:B, 4p8q:A, 4p8q:B, 4pj6:A, 4pj6:B, 6ydx:A, 6ydx:B, 4z7i:A, 4z7i:B, 7zyf:A, 7zyf:B
19 3ugv:F 364 58 0.1327 0.0412 0.2586 7.5 3ugv:A, 3ugv:B, 3ugv:C, 3ugv:D, 3ugv:E, 3ugv:G, 3ugv:H
20 4a9v:A 581 30 0.0973 0.0189 0.3667 8.6 4a9x:A, 4alf:A, 4alf:B, 4amf:A, 4amf:B, 3zwu:A, 3zwu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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