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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NMADYNTYQSNVQINNLSYGVYRSGDKESQFFCVGLKRGSQVPNVHTICKIDVFGTHKQGFDNMLATARYYYATGEDVRI
YYKENVWTDRNFTAAFSGNELIAITTCTSSDYCMGPTLP

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5whu:H 124 119 1.0000 0.9597 1.0000 1.40e-88 5whu:A, 5whu:C, 5whu:D, 5whu:E, 5whu:I, 5whu:J, 5whv:F
2 7ee5:E 120 117 0.7143 0.7083 0.7265 9.18e-63 7ee4:A, 7ee4:D, 7ee4:E, 7ee5:A, 7ee5:D
3 6p4q:B 115 115 0.3193 0.3304 0.3304 1.32e-14 7k7h:E, 6p4m:A, 6p4m:B, 6p4m:C, 6p4m:D, 6p4m:E, 6p4n:C, 6p4n:D, 6p4n:E, 6p4q:A, 6p4q:C, 6p4q:D, 6p4q:E, 6p4r:A, 6p4r:B, 6p4r:C, 6p4r:D, 6p4r:E, 6p4t:A, 6p4t:C, 6p4t:D, 4rhs:C, 4rhs:E, 6tyn:A, 6tyn:C, 6tyn:D, 6tyn:E, 6tyo:A, 6tyo:C, 6tyo:D, 6tyo:E, 6tyq:C, 6tyq:D, 6tyq:E, 5wht:A, 5wht:C, 5wht:B, 5wht:D
4 3dwp:C 120 88 0.2605 0.2583 0.3523 5.54e-13 3dwp:A, 3dwp:B, 3dwp:D, 3dwp:E, 3dwq:A, 3dwq:C, 3dwq:D, 3dwq:E
5 5o1j:A 580 37 0.1092 0.0224 0.3514 3.5 5mpq:A
6 2wtg:A 158 29 0.0924 0.0696 0.3793 4.7 2wth:A, 2wth:B
7 1kjv:A 276 61 0.1513 0.0652 0.2951 5.5
8 3czm:B 323 41 0.1176 0.0433 0.3415 6.1 3czm:A, 1sow:A, 1sow:B
9 4o8c:B 255 35 0.0924 0.0431 0.3143 6.8
10 4rtb:A 429 21 0.0924 0.0256 0.5238 9.4
11 6c9r:A 337 55 0.1176 0.0415 0.2545 9.9 6c67:A, 6c67:B, 6c9n:A, 6c9n:B, 6c9p:A, 6c9p:B, 6c9q:A, 6c9r:B, 6c9s:A, 6c9s:B, 6c9v:A, 6c9v:B, 4o1g:A, 2pkk:A, 2pkm:A, 2pkn:A, 4pvv:A, 4ube:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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