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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NLYFQGSGRRLVLPVSARTSGALRGQAHALARRLEERPGLRLDDVAGALRADRPALRHRLTVSASSVPEAVEALRAAVPA
VPPVPDEPPKVAFLLPGGGTQYVGMGSGLYRENDVYRDTVDRCAAVLRPALGSDLRTALFEEVEPGSTAAFMALFVTEYA
LARTLMEEGVRPDALIGHSLGEYTAACLAGVMEIDEALPVVAERIRLIASSGGATVGVAACADTVLPLLGEGLSLAAVNS
PVACTVAGDTDAVDRLEAELTRRGVPFRRLRMPAAAHSHVLDPILESFAGHLRTLTLRPPRIPYVTNVTGDWATDAQATD
VGHWVDHTRRTVRFADGIAALWERERPVLVEIGPGDSLTKLARARLDGEGPVTVTTMRHAKAQAADGFVLAEALGRLWSA
GVDAALPH

The query sequence (length=408) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ydl:A 408 408 1.0000 1.0000 1.0000 0.0 5ydm:A
2 4mz0:A 896 416 0.3113 0.1417 0.3053 6.03e-54
3 7m7f:A 1390 389 0.3064 0.0899 0.3213 1.54e-38 2fr0:A, 2fr1:A, 7m7i:A
4 7vef:A 828 403 0.3309 0.1630 0.3350 1.93e-37 8in9:A
5 6l3m:B 420 361 0.3211 0.3119 0.3629 2.50e-37 6l3m:A, 6l3m:C, 6l3m:D, 6l3n:A, 6l3n:B, 6l3n:C, 6l3n:D
6 4mz0:B 823 408 0.2721 0.1349 0.2721 8.24e-34
7 2qo3:B 873 369 0.2794 0.1306 0.3089 3.61e-31 2qo3:A
8 8aw0:A 320 299 0.1863 0.2375 0.2542 6.05e-30 8avz:A, 8avz:C, 8avz:B, 8avz:D, 8aw0:F, 8aw0:B, 8aw0:D, 8aw0:C, 8aw0:H, 8aw0:E
9 7s6c:B 891 343 0.2647 0.1212 0.3149 6.87e-30
10 7vrs:A 444 367 0.2794 0.2568 0.3106 1.17e-22 7vrs:B
11 7ags:A 427 375 0.2843 0.2717 0.3093 5.21e-22 7agu:A
12 3tqe:A 316 314 0.1961 0.2532 0.2548 3.55e-20
13 3im9:A 313 292 0.1985 0.2588 0.2774 6.25e-20
14 5zk4:A 287 293 0.2083 0.2962 0.2901 7.38e-20 6apg:A, 6apg:B, 3sbm:A, 5zk4:B
15 8cuy:A 1016 329 0.2034 0.0817 0.2523 9.28e-20
16 3hjv:A 307 288 0.1985 0.2638 0.2812 1.58e-18
17 8cg5:A 1282 339 0.1985 0.0632 0.2389 1.30e-17 6fij:B
18 8cg6:A 1208 339 0.1985 0.0671 0.2389 1.30e-17
19 3tzw:A 467 320 0.1912 0.1670 0.2437 6.37e-17 3tzx:B, 3tzx:A, 3tzy:B, 3tzy:A, 3tzz:B, 3tzz:A
20 2vz9:B 2086 334 0.2255 0.0441 0.2754 9.73e-15 2vz9:A
21 2jfk:D 410 339 0.2181 0.2171 0.2625 4.92e-14
22 8i4y:A 1687 364 0.2598 0.0628 0.2912 5.00e-14 8i4y:B, 8i4z:A
23 6u0j:A 309 299 0.2010 0.2654 0.2742 1.41e-13 2g2z:A
24 5my0:A 852 275 0.1863 0.0892 0.2764 5.06e-13 5my0:C, 5my0:D, 5my2:D, 6rop:A, 6rop:C, 6rop:D
25 6rop:B 831 269 0.1789 0.0878 0.2714 3.17e-11
26 4amp:A 372 227 0.1691 0.1855 0.3040 1.99e-08
27 8csp:8 326 323 0.1838 0.2301 0.2322 5.88e-08 2c2n:A, 8csq:8, 8csr:8, 8css:8
28 4v8l:D 2822 192 0.1373 0.0198 0.2917 4.26e-05 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
29 4v8l:D 2822 252 0.1495 0.0216 0.2421 9.7 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
30 7cpx:A 2262 240 0.1422 0.0256 0.2417 1.61e-04 7cpx:B, 7cpy:A, 7cpy:B
31 6gjc:A 2770 137 0.0907 0.0134 0.2701 8.59e-04 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
32 4v58:G 2060 178 0.1152 0.0228 0.2640 0.011 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
33 8ps2:G 2036 177 0.1176 0.0236 0.2712 0.015 3hmj:G, 3hmj:H, 3hmj:I, 8prv:G, 8prw:G, 8prw:J, 8prw:I, 8prw:H, 8prw:K, 8prw:L, 8ps1:G, 8ps9:G, 8psa:G, 8psf:G, 8psg:G, 8psj:G, 8psk:G, 8psl:G, 8psm:G, 8psp:G, 6ql5:I, 6ql5:G, 6ql5:H, 6ql5:L, 6ql5:J, 6ql5:K, 6ql6:G, 6ql6:H, 6ql6:I, 6ql6:J, 6ql6:K, 6ql6:L, 6ql9:G, 6ql9:H, 6ql9:I, 6ql9:J, 6ql9:K, 6ql9:L, 6ta1:G, 6ta1:C, 6ta1:E, 6ta1:L, 6ta1:H, 6ta1:J, 6u5t:G, 6u5u:G, 2uv8:G, 2uv8:H, 2uv8:I, 2vkz:G, 2vkz:H, 2vkz:I
34 7tui:B 2033 178 0.1103 0.0221 0.2528 0.044 6u5v:B, 6u5w:B
35 3bg6:A 577 105 0.0662 0.0468 0.2571 1.5 3bg6:B, 3bg6:C, 3bg6:D, 3bg6:E, 3bg6:F, 3bg6:G, 3bg6:H, 3bg7:A, 3bg7:B, 3bg7:C, 3bg7:D, 3bg7:E, 3bg7:F, 3bg7:G, 3bg7:H, 3bly:A, 2f5v:A, 2f6c:A, 3fdy:A, 2igk:A, 2igk:B, 2igk:C, 2igk:D, 2igk:E, 2igk:F, 2igk:G, 2igk:H, 2igm:A, 2igm:B, 2igm:D, 2igm:C, 2igm:E, 2igm:F, 2igm:G, 2igm:H, 2ign:A, 2ign:B, 2ign:D, 2ign:C, 2ign:E, 2ign:F, 2ign:H, 2ign:G, 2igo:A, 2igo:B, 2igo:D, 2igo:C, 2igo:E, 2igo:F, 2igo:H, 2igo:G, 3k4b:A, 3k4c:A, 3k4c:B, 3k4c:C, 3k4c:D, 3k4j:A, 3k4k:A, 3k4l:A, 3k4l:B, 3k4m:A, 3k4m:B, 3k4m:C, 3k4m:D, 3k4m:E, 3k4m:F, 3k4m:G, 3k4m:H, 3k4n:A, 3k4n:B, 3lsh:A, 3lsh:B, 3lsh:C, 3lsh:D, 3lsi:A, 3lsi:B, 3lsk:A, 3lsk:B, 3lsk:C, 3lsk:D, 3lsm:A, 3lsm:B, 4moe:A, 4moe:B, 4moe:C, 4moe:D, 4mof:A, 4mog:A, 4moh:A, 4moi:A, 4moi:B, 4moj:A, 4moj:B, 4moj:C, 4moj:D, 4mok:A, 4mok:B, 4mok:C, 4mok:D, 4mol:A, 4mol:B, 4mol:C, 4mol:D, 4mom:A, 4mom:B, 4mom:C, 4mom:D, 4moo:A, 4mop:A, 4mop:B, 4mop:C, 4mop:D, 4moq:A, 4moq:B, 4mor:A, 4mor:B, 4mor:C, 4mor:D, 4mos:A, 3pl8:A, 1tt0:A, 1tt0:B, 1tt0:C, 1tt0:D, 1tzl:A, 1tzl:B, 1tzl:C, 1tzl:D, 1tzl:E, 1tzl:F, 1tzl:G, 1tzl:H
36 5bxy:A 155 63 0.0417 0.1097 0.2698 1.7 5bxy:B
37 7bc4:B 2054 36 0.0343 0.0068 0.3889 1.9
38 7bc4:B 2054 55 0.0515 0.0102 0.3818 5.5
39 7pua:Fg 520 32 0.0319 0.0250 0.4062 2.3 7pub:Fg
40 1w52:X 448 92 0.0735 0.0670 0.3261 4.0
41 7lr6:A 424 59 0.0515 0.0495 0.3559 4.0 7lr6:B, 7lr6:C, 7lr6:D
42 3g8r:B 336 67 0.0466 0.0565 0.2836 4.1
43 4bn2:C 311 48 0.0441 0.0579 0.3750 4.6
44 6zpi:C 332 48 0.0441 0.0542 0.3750 4.7 4bn2:A, 4bn2:B, 6zph:B
45 4aj3:A 416 62 0.0466 0.0457 0.3065 5.1 1ai2:A, 1ai3:A, 4aja:A, 4ajb:A, 4ajc:A, 4ajr:A, 4ajs:A, 1bl5:A, 1cw1:A, 1cw4:A, 1cw7:A, 1gro:A, 1grp:A, 1hj6:A, 9icd:A, 1idc:A, 1ide:A, 1ika:A, 1iso:A
46 3bs6:A 258 49 0.0392 0.0620 0.3265 5.7
47 6wmp:C 1196 56 0.0441 0.0151 0.3214 6.0 6wmr:C, 6wmt:C
48 7ktr:A 3042 91 0.0637 0.0085 0.2857 6.9
49 8xvg:L 3485 91 0.0637 0.0075 0.2857 6.9 8xvv:L
50 6mg0:B 1687 105 0.0760 0.0184 0.2952 7.3
51 6mfz:A 1789 105 0.0760 0.0173 0.2952 7.9 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
52 1oxu:A 353 40 0.0319 0.0368 0.3250 8.0 1oxu:B, 1oxu:C, 1oxv:A, 1oxv:B, 1oxv:D
53 2y53:A 529 74 0.0564 0.0435 0.3108 8.9 2vro:A, 2vro:B, 2y53:B, 2y5d:A, 2y5d:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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