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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLW
DQSLKPCVKLTPLCVTKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIK
PVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNIGDIRQAHCNVSKATWNETLGKVVKQLRKHFG
NNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSN
ITGLILTRDGGSTSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRC

The query sequence (length=372) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6cm3:D 372 372 1.0000 1.0000 1.0000 0.0 6cm3:E, 6cm3:F, 7lo6:C, 7lo6:A, 7lo6:E, 7lok:A, 7lok:C, 7lok:E, 6u0l:B, 6u0l:C, 6u0n:A, 6u0n:C
2 7txd:A 397 397 0.9892 0.9270 0.9270 0.0 7txd:E
3 8d0y:G 455 448 0.9839 0.8044 0.8170 0.0 5cez:G, 6ch8:G, 6de7:G, 5i8h:A, 5i8h:C, 7l7u:A, 7l7u:C, 7l7u:E, 6mtj:G, 6mtn:G, 6mu6:G, 6mu7:G, 6mu8:G, 7pc2:A, 7rai:A, 7rai:C, 7rai:E, 8s2e:E, 5t3z:G, 8tjr:B, 8tjr:C, 8tjs:G, 8tjs:N, 8tjs:O, 8ttw:E, 8ttw:I, 8ttw:A, 4tvp:G, 5u7m:G, 5u7o:G, 7ucf:G, 5utf:G, 5v7j:G, 4zmj:G
4 6opp:A 389 384 0.8065 0.7712 0.7812 0.0 6opo:A, 6opo:D, 6opo:J, 6opp:D, 6opp:J, 6opq:A, 6opq:D, 6opq:E, 5vn3:G, 5vn3:I, 5vn3:J
5 6meo:G 398 398 0.7957 0.7437 0.7437 0.0 6met:G
6 8czz:A 440 441 0.7957 0.6727 0.6712 0.0 8czz:E, 8czz:I
7 7n6u:B 595 443 0.8065 0.5042 0.6772 0.0 5fuu:A, 5fuu:D, 5fuu:E, 5fuu:F, 6j5e:K, 7n6u:C, 7n6u:A, 7n6w:A, 7n6w:B, 7n6w:C, 6olp:C, 7ska:B, 7ska:O, 7ska:Z, 6vpx:C, 5y14:C, 5y14:A, 5y14:B, 5yc0:B, 5yc0:C, 5yc0:F
8 6ch9:G 448 442 0.8226 0.6830 0.6923 0.0 6mug:G
9 8d53:G 446 440 0.7984 0.6659 0.6750 0.0
10 4xmp:G 337 354 0.7849 0.8665 0.8249 0.0
11 6edu:D 401 409 0.7957 0.7382 0.7237 0.0 6edu:E, 6edu:F
12 7lu9:e 461 458 0.7849 0.6334 0.6376 0.0 7lu9:f
13 6x5b:A 353 374 0.7661 0.8074 0.7620 0.0 6opn:A, 6opn:D, 6opn:G, 6x5b:D, 6x5b:J, 6x5c:A, 6x5c:D, 6x5c:E
14 4r4n:B 342 356 0.7634 0.8304 0.7978 0.0 4r4n:A, 4r4n:E, 4r4n:I, 4r4n:M, 4r4n:P, 4r4n:S, 4r4n:V
15 4j6r:G 343 361 0.7581 0.8222 0.7812 0.0
16 5w4l:G 357 369 0.7204 0.7507 0.7263 0.0 6bf4:G, 8dcq:A, 4dko:A, 4dko:C, 4dkp:A, 4dkp:C, 4dkq:A, 4dkr:A, 4dkr:C, 4dku:A, 4dku:B, 4dkv:A, 4dkv:B, 4dvs:A, 4dvs:B, 4dvt:A, 4dvt:B, 4dvv:A, 4dvv:B, 4dvw:A, 4dvw:B, 4dvx:A, 4dvx:B, 8f9z:A, 8fa0:A, 8gcz:A, 8gd0:A, 8gd1:A, 8gd3:A, 8gd5:A, 8gdj:A, 8gdk:A, 8gjt:A, 4i54:A, 4i54:B, 5kjr:G, 4lsq:G, 6mfp:G, 6mfp:A, 6mg7:G, 7n8q:G, 3ngb:G, 3ngb:A, 3ngb:D, 3ngb:I, 6one:A, 6onf:A, 6onh:A, 6onv:A, 6ooo:A, 6p9n:A, 4rfn:G, 4rfn:A, 4rfo:G, 4rz8:A, 4rz8:B, 4rz8:C, 4rz8:D, 3se9:G, 5u6e:A, 5u6e:B, 5uem:G, 6usw:A, 6ut1:A, 5w4l:A, 6w4m:G
17 4laj:A 343 360 0.7285 0.7901 0.7528 0.0 4dvr:G, 2i5y:G, 2i5y:P, 2i60:G, 2i60:P, 4jzw:G, 4jzw:A, 4jzz:A, 4k0a:A, 4ka2:A, 4laj:J, 4laj:F, 4laj:B, 4r4f:A, 1yyl:G, 1yyl:P, 1yym:G, 1yym:P
18 8fae:A 468 461 0.7715 0.6132 0.6226 0.0 8fad:C, 8fad:E, 8fad:A, 8fae:C, 8fae:E
19 6pwu:A 615 468 0.7715 0.4667 0.6132 0.0 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
20 3tgs:A 345 363 0.6989 0.7536 0.7163 0.0 5f4l:A, 5f4l:B, 5f4p:D, 5f4p:A, 5f4r:A, 5f4r:C, 5f4u:A, 5f4u:B, 8fly:A, 8fly:B, 8fly:C, 8fly:D, 8flz:A, 8flz:D, 8flz:B, 8flz:C, 8fm0:B, 8fm0:A, 8fm0:C, 8fm0:D, 8fm2:D, 8fm2:B, 8fm2:A, 8fm2:C, 8fm3:A, 8fm3:C, 8fm3:D, 8fm3:B, 8fm4:B, 8fm4:D, 8fm4:A, 8fm4:C, 8fm5:D, 8fm5:A, 8fm5:C, 8fm5:B, 8fm7:A, 8fm7:B, 8fm7:C, 8fm7:D, 8fm8:C, 8fm8:D, 8fm8:A, 8fm8:B, 4i53:A, 4i53:B, 7rsx:C, 7rsx:B, 7rsx:A, 7rsx:D, 7rsy:A, 7rsy:B, 7rsy:C, 7rsy:D, 7rsz:B, 7rsz:A, 7rsz:C, 7rsz:D, 3tgs:B, 7tjo:D, 7tjo:A, 7tjo:C, 7tjo:B, 7tjp:A, 7tjp:B, 7tjp:D, 7tjp:C
21 5fa2:A 336 350 0.6586 0.7292 0.7000 0.0
22 5te4:G 341 358 0.6855 0.7478 0.7123 0.0
23 8tgw:A 387 424 0.7177 0.6899 0.6297 2.51e-180
24 1gc1:G 297 308 0.6237 0.7811 0.7532 7.69e-170
25 5fyj:G 479 304 0.5538 0.4301 0.6776 9.14e-142
26 5fyj:G 479 96 0.2312 0.1795 0.8958 2.23e-56
27 7mxd:A 472 307 0.5376 0.4237 0.6515 7.47e-141 7mxd:F, 7mxd:G, 7n28:A
28 7mxd:A 472 96 0.2339 0.1843 0.9062 3.68e-57 7mxd:F, 7mxd:G, 7n28:A
29 6tyb:G 345 373 0.3172 0.3420 0.3164 1.14e-50 3fus:A
30 7t4g:A 493 312 0.2581 0.1947 0.3077 2.73e-36 7t4g:C, 7t4g:E
31 7t4g:A 493 106 0.1237 0.0933 0.4340 4.22e-19 7t4g:C, 7t4g:E
32 7ana:AAA 475 84 0.0618 0.0484 0.2738 0.058 7ana:BBB, 7anb:AAA, 7anb:BBB
33 6rmw:C 386 55 0.0457 0.0440 0.3091 0.31 6rmd:D, 6rme:A, 6rme:B, 6rme:C, 6rme:D, 6rme:E, 6rme:F, 6rme:G, 6rme:H, 6rmw:A, 6rmw:B, 6rmw:D, 6rmw:E, 6rmw:F, 6rmw:G, 6rmw:H
34 7rsw:B 125 28 0.0323 0.0960 0.4286 4.6
35 8xr6:V 137 47 0.0430 0.1168 0.3404 4.6 8wb4:V, 8wb4:v, 8xr6:v
36 4dzh:A 439 146 0.0914 0.0774 0.2329 5.2
37 2bdz:A 212 84 0.0565 0.0991 0.2500 6.5 2bdz:D, 2bdz:B, 2bdz:C
38 5wn9:H 236 104 0.0699 0.1102 0.2500 7.2
39 1ece:A 358 52 0.0430 0.0447 0.3077 7.3 1ece:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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