BioLiP

>protein
NLSKLLTRYSTLNTLIKLSADPSAINAARENLGASAKNLIGDTKNSPAYQAVLLAINAAVGFWNVLGYATQCGGNANGQE
STSSTTIFNNEPGYRSTSITCSLNRYKPGYYGPMSIENFKKLNEAYQILQTALNKGLPALKENNGTVSVTYTYTCSGEGN
DNCSKKATGVSDQNGGTKTKTQTGKTVTTKISSKVVDSQAKGNTTRVSYTEITNKLDGVPDSAQALLAQASTLINTINTA
CPYFSVTNKSGGPQMEPTRGKLCGFTEEISAIQKMITDAQELVNQTSVINEHEQSTPVGGNNGKPFNPFTDASFAQGMLA
NASAQAKMLNLAHQVGQTINPDNLTGTFKNFVTGFLATCNNKGSPPGTVTTQTFASGCAYVEQTITNLNNSIAHFGTQEQ
QIQQAENIADTLVNFGS

The query sequence (length=417) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	5f93:B	426	422	0.9376	0.9178	0.9265	0.0	5f7m:A, 5f7m:B, 5f7n:A, 5f7n:B, 5f7w:A, 5f7w:B, 5f7y:A, 5f7y:B, 5f8r:A, 5f8r:B, 5f93:A, 5f93:E, 5f93:G, 5f97:A, 5f97:B, 5f97:C, 5f97:D, 5f9a:A, 5f9d:A
2	4zh7:A	485	421	0.8417	0.7237	0.8337	0.0
3	6avz:B	347	410	0.3094	0.3718	0.3146	5.67e-36
4	6rm3:LD0	282	73	0.0384	0.0567	0.2192	1.5
5	4g7e:B	833	24	0.0264	0.0132	0.4583	3.3
6	8a0c:A	1116	50	0.0408	0.0152	0.3400	3.8	8a0c:B, 8a0m:A, 8a0m:C
7	3rbh:D	410	92	0.0552	0.0561	0.2500	3.9	3rbh:C
8	3plx:B	101	51	0.0384	0.1584	0.3137	5.6
9	7ohu:P	108	52	0.0384	0.1481	0.3077	6.7	7ohp:P
10	7olc:La	148	24	0.0216	0.0608	0.3750	6.9	7old:La, 8oo0:La, 7z3n:La, 7z3o:La

[Back]