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BioLiP
>protein
NLRSRPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSA
DTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQSLDNNAAFIRSDVDFHRVLA
EIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRALQSHLNSV

The query sequence (length=228) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wfq:C 228 228 1.0000 1.0000 1.0000 9.91e-168 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
2 1h9t:A 232 158 0.2105 0.2069 0.3038 2.41e-10 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
3 2di3:A 231 233 0.2807 0.2771 0.2747 3.67e-07 2di3:B
4 7c7e:A 142 127 0.1404 0.2254 0.2520 3.32e-05
5 4u0v:A 243 81 0.1140 0.1070 0.3210 4.08e-05 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
6 7u5q:A 217 228 0.2719 0.2857 0.2719 4.57e-04 7u5q:B
7 4wwc:A 213 63 0.1009 0.1080 0.3651 6.14e-04
8 4p9u:E 272 68 0.0965 0.0809 0.3235 0.001 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
9 5dv5:A 267 61 0.0921 0.0787 0.3443 0.001 5dv5:B
10 5d4s:B 83 50 0.0746 0.2048 0.3400 0.003 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
11 7xp0:A 200 225 0.2500 0.2850 0.2533 0.003 7xp1:A
12 2fbh:A 137 61 0.0833 0.1387 0.3115 1.2
13 4axs:A 291 53 0.0658 0.0515 0.2830 2.1
14 3sxk:A 140 100 0.1140 0.1857 0.2600 3.1 3sxk:B, 3sxm:A, 3sxm:B
15 5xla:A 490 102 0.1272 0.0592 0.2843 3.5 3eyk:B, 5xl3:B, 5xl3:A, 5xl4:A, 5xl4:B, 5xl6:A, 5xl7:A, 5xl7:B, 5xl9:A, 5xla:B, 5xlc:A, 5xlc:B, 5xld:A, 5xld:B
16 3x3m:A 397 35 0.0702 0.0403 0.4571 4.2 5ebc:A, 3x3n:A
17 3gb5:A 185 32 0.0614 0.0757 0.4375 5.0 3to0:A, 3to0:B
18 3tnz:A 222 32 0.0614 0.0631 0.4375 6.1 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
19 8xgm:A 306 90 0.0921 0.0686 0.2333 6.5 8jjp:A
20 8r7y:C 312 96 0.1272 0.0929 0.3021 7.6 7bhy:A, 7bhy:B, 7bhy:C, 4oqp:A, 8r7y:D, 8r7y:A, 8r7y:B
21 5b4x:B 479 21 0.0526 0.0251 0.5714 8.3 3a7q:B, 5b4x:D, 5b4y:B
22 6fbx:A 148 44 0.0702 0.1081 0.3636 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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