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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NLQKLLAPYHKAKTLERQVYELEKLQEKLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTPTNDQLTDLQEAHFVVF
ESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTLIFPYIPDKAVYNAIVKV
VVANIGYEGQYHVRIINQDI

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7w81:A 181 180 1.0000 0.9945 1.0000 2.07e-132 3qug:A, 3qug:B, 3quh:A, 3quh:B, 3vtm:A, 3vtm:B, 7w81:B, 2z6f:A
2 7pcf:F 341 177 0.6389 0.3372 0.6497 1.25e-81 7pch:E, 7pch:F, 3rtl:A, 3rtl:B, 3rtl:C, 3rtl:D, 3rur:A, 3rur:B, 3rur:C, 3rur:D, 5vmm:F, 5vmm:E
3 3sik:A 123 104 0.1722 0.2520 0.2981 2.01e-06 3sik:B
4 4x8r:A 304 66 0.1167 0.0691 0.3182 0.13 4x8r:B
5 4h8q:A 119 103 0.1556 0.2353 0.2718 0.14 4h8p:A
6 3qzp:B 125 104 0.1389 0.2000 0.2404 0.34 2itf:A, 2itf:B, 2itf:C, 2itf:D, 3qzl:A, 3qzm:A, 3qzm:B, 3qzn:A, 3qzn:B, 3qzn:C, 3qzo:A, 3qzo:C, 3qzo:B, 3qzo:D, 3qzp:A
7 4ymp:A 112 73 0.0889 0.1429 0.2192 1.6 4ymp:C
8 4pj3:A 1335 37 0.0889 0.0120 0.4324 1.7 7a5p:U, 6icz:Q, 6id1:Q, 7w59:Q, 7w5a:Q, 7w5b:Q, 5xjc:Q
9 8p0j:B 1155 60 0.1000 0.0156 0.3000 2.1 8p0k:B, 8p0n:B
10 2zsi:A 339 61 0.0833 0.0442 0.2459 3.0 2zsh:A
11 2xxl:A 354 39 0.0611 0.0311 0.2821 4.9 2xxl:B
12 6qld:e 106 52 0.0833 0.1415 0.2885 6.0 7k78:A, 6qld:a, 6uph:A
13 7e2i:D 907 61 0.1000 0.0198 0.2951 6.6 7e2g:D, 7e2h:E
14 5jvj:B 797 61 0.1000 0.0226 0.2951 6.8
15 5kax:A 158 36 0.0778 0.0886 0.3889 7.3 5kax:B
16 8dga:A 1629 80 0.1333 0.0147 0.3000 8.0
17 2k78:A 126 76 0.1056 0.1508 0.2500 9.7 2o6p:A, 2o6p:B
18 3rj1:G 103 21 0.0556 0.0971 0.4762 9.9 3rj1:N, 3rj1:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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