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BioLiP
>protein
NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKN

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4u7y:A 83 72 1.0000 0.8675 1.0000 2.78e-47 2jqk:A
2 2k3w:A 73 71 0.7500 0.7397 0.7606 1.43e-35 2jq9:A
3 5fvl:A 83 71 0.4583 0.3976 0.4648 1.40e-12 5fvk:A, 5fvk:B, 5fvl:B, 4niq:A, 4niq:B
4 2ymb:D 231 67 0.3194 0.0996 0.3433 3.68e-05 4a5x:A, 4a5x:B, 2ymb:C
5 8uc6:B 148 70 0.3333 0.1622 0.3429 0.004 8uc6:C
6 8uc6:B 148 62 0.2917 0.1419 0.3387 0.006 8uc6:C
7 4wzx:A 87 72 0.3472 0.2874 0.3472 0.022
8 2w2u:A 75 65 0.3194 0.3067 0.3538 0.13 2w2u:B
9 1b0p:A 1231 20 0.1528 0.0089 0.5500 2.0 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
10 7k1r:A 536 35 0.1806 0.0243 0.3714 3.8 7k1r:B, 7k1r:C, 7k1r:D, 8uws:C, 8uws:D, 8uws:A, 8uws:B
11 3d2j:A 502 22 0.1528 0.0219 0.5000 5.5 3d2d:A, 3d2h:A, 4ec3:A, 3fw7:A, 3fw8:A, 3fw9:A, 3fwa:A, 3gsy:A, 4pzf:A, 4pzf:B, 4pzf:C, 4pzf:D
12 6een:A 315 14 0.1389 0.0317 0.7143 7.9 6een:B, 6een:C, 6een:D
13 6een:A 315 14 0.1389 0.0317 0.7143 7.9 6een:B, 6een:C, 6een:D
14 6een:A 315 14 0.1389 0.0317 0.7143 7.9 6een:B, 6een:C, 6een:D
15 6een:A 315 14 0.1389 0.0317 0.7143 7.9 6een:B, 6een:C, 6een:D
16 6een:A 315 14 0.1389 0.0317 0.7143 7.9 6een:B, 6een:C, 6een:D
17 6een:A 315 14 0.1389 0.0317 0.7143 7.9 6een:B, 6een:C, 6een:D
18 4a8f:B 664 46 0.1944 0.0211 0.3043 8.0 4a8f:A, 4a8f:C, 4a8k:B, 4a8k:A, 4a8k:C, 4a8m:Q, 4a8m:P, 4a8m:R, 4a8o:A, 4a8o:B, 4a8o:C, 4a8q:A, 4a8q:B, 4a8q:C, 4a8s:A, 4a8s:B, 4a8s:C, 4a8w:A, 4a8w:B, 4a8w:C, 4a8y:A, 4a8y:B, 4a8y:C, 4b02:A, 4b02:B, 4b02:C, 5fj6:A, 5fj7:C, 1hhs:A, 1hhs:B, 1hhs:C, 1hht:P, 1hht:Q, 1hht:R, 1hi0:P, 1hi0:Q, 1hi0:R, 1hi1:A, 1hi1:B, 1hi1:C, 1hi8:A, 1hi8:B, 2jlf:A, 2jlf:B, 2jlg:A, 2jlg:B, 2jlg:C, 1uvi:A, 1uvi:B, 1uvi:C, 1uvj:A, 1uvj:B, 1uvj:C, 1uvk:A, 1uvk:C, 1uvk:E, 1uvl:A, 1uvl:C, 1uvl:E, 1uvm:A, 1uvm:B, 1uvm:C, 1uvn:A, 1uvn:C, 1uvn:E
19 5msl:A 75 32 0.1528 0.1467 0.3438 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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