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BioLiP
>protein
NLPSIFVPLVGLVFPAIAMTSLFLYVQKKK

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bcv:I 33 30 0.9667 0.8788 0.9667 1.71e-14 8bcw:I, 7ew6:I, 7ewk:I, 7f9o:I, 7f9o:l, 5zji:I
2 7wfd:AI 33 30 0.8667 0.7879 0.8667 5.56e-13 8j6z:I, 8j7a:I, 8j7b:I, 7wfe:BI, 7wg5:AI, 7wg5:BI
3 7yca:I 35 29 0.7667 0.6571 0.7931 9.35e-12
4 6ly5:i 33 29 0.7333 0.6667 0.7586 2.78e-11 7dkz:I, 5l8r:I, 3lw5:I, 2o01:I, 2wsc:I, 2wse:I, 2wsf:I, 4xk8:i, 6yac:I, 6yez:I, 6zoo:I, 6zxs:I
5 7a4p:I 35 29 0.7000 0.6000 0.7241 1.32e-10 6zzx:I, 6zzy:I
6 6igz:I 32 27 0.7667 0.7188 0.8519 1.42e-10
7 8htu:I 34 29 0.6667 0.5882 0.6897 3.27e-10 7ksq:I, 7kux:I, 6l35:I, 7xqp:I
8 7dz7:I 42 27 0.6000 0.4286 0.6667 3.02e-08 7bgi:I, 7blx:I, 8cmo:I, 7d0j:I, 7dz8:I, 6ijj:I, 6ijo:I, 6jo5:I, 6jo6:I, 7r3k:I, 7zq9:I, 7zq9:I2, 7zqc:I, 7zqd:I, 7zqd:I2
9 7qco:I 39 29 0.6333 0.4872 0.6552 7.42e-08 7qco:P, 7qco:p, 7qco:i
10 7dr0:I 30 30 0.5667 0.5667 0.5667 1.42e-07 7dr1:I, 7dr2:aI, 7dr2:bI, 7dr2:cI, 7dr2:dI
11 6l4u:I 35 29 0.5667 0.4857 0.5862 3.05e-07
12 7y5e:IN 31 27 0.5667 0.5484 0.6296 7.72e-07 7y5e:I2, 7y7a:I7, 7y7a:Io
13 6kif:I 38 29 0.5333 0.4211 0.5517 8.02e-06 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
14 8wm6:I 34 29 0.4333 0.3824 0.4483 1.16e-05 8wmj:I, 8wmv:I, 8wmw:I
15 6sl5:I 39 26 0.5000 0.3846 0.5769 1.34e-05
16 7y7b:I 33 28 0.4667 0.4242 0.5000 2.07e-05 7y8a:I
17 8am5:i 40 29 0.4000 0.3000 0.4138 1.41e-04 8asl:i, 8asp:i, 6hqb:I, 4l6v:I, 4l6v:i, 4l6v:9, 6nwa:I, 6nwa:i, 6nwa:R, 5oy0:I, 5oy0:i, 5oy0:h, 7umh:I, 7umh:R, 7umh:i, 6uzv:I, 6uzv:i, 6uzv:h
18 6vpv:I 38 29 0.5000 0.3947 0.5172 1.96e-04 6vpv:i, 6vpv:7
19 6k61:I 34 29 0.4333 0.3824 0.4483 6.06e-04 6jeo:aI, 6jeo:bI, 6jeo:cI, 6jeo:dI, 6k61:i, 6tcl:I1, 6tcl:I2, 6tcl:I, 6tcl:II, 7y3f:I
20 8jjr:i 120 22 0.4333 0.1083 0.5909 0.001
21 4fe1:I 38 29 0.4000 0.3158 0.4138 0.004 7fix:I1, 7fix:I2, 7fix:I3, 1jb0:I, 6k33:aI, 6k33:bI, 6k33:cI, 6lu1:I, 7m75:I, 7m76:I, 7m78:I, 3pcq:I, 6pfy:I, 6pfy:R, 6pfy:e, 6pgk:I, 6pgk:R, 6pgk:e, 6tra:I, 6trc:I, 6trc:7, 6trc:i, 6trd:I, 6trd:7, 6trd:i, 5zf0:I1, 5zf0:I2, 5zf0:I3, 5zf0:I4, 5zf0:I5, 5zf0:I6
22 8wey:I 32 27 0.4667 0.4375 0.5185 0.005 7blz:I, 5zgb:I, 5zgh:I
23 8jze:i 119 22 0.4000 0.1008 0.5455 0.009 8jzf:i
24 7coy:aI 30 27 0.4333 0.4333 0.4815 0.011 7coy:bI, 7coy:cI
25 6kmw:aI 38 29 0.3333 0.2632 0.3448 0.085 6kmw:cI, 6kmw:bI
26 7lx0:R 42 28 0.4000 0.2857 0.4286 0.35 7lx0:I, 7lx0:i, 6pnj:I, 6pnj:R, 6pnj:i
27 6kmx:aI 41 28 0.2667 0.1951 0.2857 8.4 6kmx:cI, 6kmx:bI
28 7e22:A 366 14 0.2667 0.0219 0.5714 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218