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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NLNLFATILTYPAPASNYRGESEENRSVIQKILKDGQKYAIISPESMRNALREMLIELGQPNNRTRLHSEDQLAVEFKEY
PNPDKFADDFLFGYMVAQTNDAKEMKKLNRPAKRDSIFRCNMAVAVNPYKYDTVFYQSPLNAGDSAWKNSTSSALLHREV
THTAFQYPFALAGKDCAAKPEWVKALLQAIAELNGVAGGHARAYYEFAPRSVVARLTPKLVAGYQTYGFDAEGNWLELSR
LTATDSDNLDLPANEFWLGGELVRKMDQEQKAQLEAMGAHLYANPEKLFADLADSFLGV

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h67:E 299 299 1.0000 1.0000 1.0000 0.0 8h67:F, 8h67:G, 8h67:H, 8h67:J, 8h67:I, 8h7q:C, 8h7q:E, 8h7q:F, 8h7q:G, 8h7q:H, 8h7q:I, 8ip0:B, 8ip0:C, 8ip0:D, 8ip0:N, 8ip0:H, 8ip0:I
2 8h7q:B 251 299 0.8395 1.0000 0.8395 1.39e-177 8h67:K, 8ip0:O
3 8fcj:H 298 299 0.2508 0.2517 0.2508 7.59e-16 8fcj:C, 8fcj:D, 8fcj:E, 8fcj:F, 8fcj:G, 8fcu:C, 8fcu:D, 8fcu:E, 8fcu:F, 8fcu:G, 8fcu:H, 8fd2:C, 8fd2:D, 8fd2:E, 8fd2:F, 8fd2:G, 8fd2:H, 8fd3:C, 8fd3:D, 8fd3:E, 8fd3:F, 8fd3:G, 8fd3:H, 8ff4:C, 8ff4:D, 8ff4:E, 8ff4:F, 8ff4:G, 8ff4:H, 8ff5:C, 8ff5:D, 8ff5:E, 8ff5:F, 8ff5:G, 8ff5:H
4 8jze:G 217 42 0.0535 0.0737 0.3810 0.90 8jw0:G, 8jzf:G
5 5umh:B 310 99 0.1003 0.0968 0.3030 2.5 5umh:A
6 1mc3:A 291 77 0.0769 0.0790 0.2987 2.6 1mc3:B
7 2r6h:C 289 65 0.0736 0.0761 0.3385 2.9 2r6h:A, 2r6h:B, 2r6h:D
8 6ai9:B 311 101 0.0870 0.0836 0.2574 6.2 6ai9:A, 6aik:A, 6aik:B, 6aim:A, 6aim:B, 6aip:A, 6aip:B
9 7v6g:B 338 57 0.0635 0.0562 0.3333 6.7 6lnk:A, 6lnk:B, 7v6f:A, 7v6f:B, 7v6g:A, 7yva:A, 7yva:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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