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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NLNKSGGKKFILELIETVYEEILDLEANLRNGQQTDSTAMWEALHIDDSSYDVNPFISMLSFDKGIKIMPRIFNFLDKQQ
KLKILQKIFNELSHLQIIILSSYKTTPKPTLTQLKKVDLFQMIILKIIVSFLSNFIEIMGLLLQLIRNNNVSFLTTSKIG
LNLITILISRAALIKQDISTWNEIYDKLFTSLESKIQLIFPPREYNDHIMRLQNDKFMDEAYIWAFLASLAASGKLNHQR
IIIDEVRDEIFATINEAETLQKKEKELSVLPQRSQELDTELKSIIYNKEKLYQDLNLFLNVMGLVYRDGEISELK

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lmg:B 321 324 0.9746 0.9564 0.9475 0.0 5lm5:A, 5lm5:B, 5lmf:B, 5lmf:A, 5lmg:A
2 7yfx:A 746 161 0.1111 0.0469 0.2174 2.6 7yfy:A, 7ygn:A
3 8kg9:M 812 71 0.0667 0.0259 0.2958 5.5
4 8oru:AAA 459 117 0.0794 0.0545 0.2137 7.1 8oru:BBB, 8oru:CCC, 8oru:DDD
5 4fjv:A 231 57 0.0508 0.0693 0.2807 8.1 8cms:AAA, 4fjv:C, 5qio:A, 5qip:A, 5qiq:A, 5qir:A, 5qis:A, 5qit:A, 5qiu:A, 5qiv:A, 5qiw:A, 5qix:A, 5qiy:A, 5qiz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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