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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NLKVVLVSFKQCLDEKEEVLLDPYIASWKGLVRFLNSLGTIFSFISKDVVSKLRIMERLRGGPQSEHYRSLQAMVAHELS
NRLVDLERRSHHPESGCRTVLRLHRALHWLQLFLEGLRTSPEDARTSALCADSYNASLAAYHPWVVRRAVTVAFCTLPTR
EVFLEAMNVGPPEQAVQMLGEALPFIQRVYNVSQKLYAEHSLLDLP

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4k80:A 209 206 1.0000 0.9856 1.0000 7.25e-154 4k84:A, 4k84:B, 4k85:A, 4k85:B, 4k85:C, 4k85:D, 4k8n:A, 4k8n:E, 4k8n:B, 4k8n:C, 4k8n:D, 4k8n:F, 4kf6:A, 4kf6:B, 4kf6:C, 4kf6:D, 4kf6:E, 4kf6:F
2 4kbr:B 207 206 0.7767 0.7729 0.7767 3.45e-121 4kbr:A, 4kbr:C, 4kbr:D, 4kbr:F, 4kbr:G, 4kbr:H
3 5kdi:A 211 190 0.2233 0.2180 0.2421 1.22e-09 5kdi:B
4 4nti:A 202 158 0.1845 0.1881 0.2405 3.37e-06 4nt2:A, 4ntg:A, 4ntg:B, 4nti:B, 4nto:A, 4nto:B, 4nto:C
5 4gxg:A 209 164 0.1796 0.1770 0.2256 6.37e-06 2bv7:A, 2euk:A, 2eum:A, 2evd:A, 2evl:A, 2evs:A, 2evs:E, 4gh0:A, 4ghp:A, 4ghs:A, 4ghs:B, 4gix:A, 4gjq:A, 4gjq:B, 4gvt:A, 4gxd:A, 4gxg:B, 4gxg:D, 4gxg:E, 4h2z:A, 3ric:A, 3rzn:A, 3s0i:A, 3s0k:A, 1sx6:A
6 7ss8:A 484 26 0.0680 0.0289 0.5385 1.6 6gyt:A, 6gyt:B, 7ssk:A
7 6gyr:A 588 26 0.0680 0.0238 0.5385 1.7 5bt3:A, 8fvf:A, 8fvf:B, 6gyr:B, 6gyr:C, 6gyr:D, 5i8b:A, 5i8g:A, 5lpk:A, 5lpk:B, 5lpk:C, 5lpk:D, 5lpk:E, 5lpk:G, 5lpk:F, 5lpm:A, 5lpm:B, 5nu5:A, 5nu5:B, 4pzr:A, 4pzs:A, 4pzt:A, 7ugi:A, 7ugi:B, 6v8n:A, 6v90:A
8 4bhw:A 563 26 0.0680 0.0249 0.5385 1.8 4bhw:B, 3biy:A, 8gzc:A, 8gzc:B, 8haj:K, 5kj2:A, 7lje:A, 7lje:B, 7lje:C, 7lje:D, 5lkt:A, 5lku:A, 5lkx:A, 5lkz:A, 6pf1:A, 6pf1:B, 6pgu:A, 6pgu:B, 7szq:A, 6v8b:A, 6v8k:A, 7vhy:A, 7vhy:B, 7vhz:A, 7vhz:B, 7vi0:A, 7vi0:B
9 8hai:K 533 26 0.0680 0.0263 0.5385 1.9 8hag:K, 8hah:K, 8hak:N
10 1c3r:A 372 22 0.0534 0.0296 0.5000 3.0 1c3r:B, 1c3s:A
11 2yzv:A 286 85 0.1262 0.0909 0.3059 5.4
12 3n7x:A 299 54 0.0825 0.0569 0.3148 6.2
13 1a59:A 377 22 0.0583 0.0318 0.5455 7.3
14 3n6r:G 646 52 0.0777 0.0248 0.3077 7.9 3n6r:I, 3n6r:K
15 4dno:A 297 88 0.1262 0.0875 0.2955 8.4 4dnf:A, 4dnf:B, 4dnf:C, 4dnf:D, 4dno:B, 4dno:C, 4dno:D, 4ehb:A, 4ehb:B, 4ehb:C, 4ehb:D, 4eus:B, 4eus:D, 5hk9:A, 5hk9:B, 5hk9:D, 5hka:A, 5hka:B, 5hka:C, 5hka:D, 5hkb:A, 5hkb:B, 5hkb:C, 5hkb:D, 5jyc:A, 5jyc:B, 5jyc:C, 5jyc:D, 5tnd:C, 5tnd:D, 5tnd:A, 5tnd:B, 5tne:A, 5tne:C, 5tnf:A, 5tnf:B, 5tnf:C, 5tnf:D, 5tng:A, 5tng:B, 5tng:C, 5tng:D, 5tnh:C, 5tnh:D, 5tnh:A, 5tnh:B, 5tni:A, 5tni:B, 5tni:C, 5tni:D, 5tnj:A, 5tnj:B, 5tnj:C, 5tnj:D, 5tnk:A, 5tnk:B, 5tnk:C, 5tnk:D, 5tnl:A, 5tnl:B, 5tnl:C, 5tnl:D, 5tnm:A, 5tnm:B, 5tnm:C, 5tnm:D, 5tnn:A, 5tnn:B, 5tnn:C, 5tnn:D, 5tnp:A, 5tnp:B, 5tnp:C, 5tnp:D, 5tnq:C, 5tnq:D, 5tnq:A, 5tnq:B, 5tnr:C, 5tnr:D, 5tnr:A, 5tnr:B, 5tns:D, 4yx9:A, 4yx9:B, 4yx9:C, 4yx9:D
16 3n6r:A 591 52 0.0777 0.0271 0.3077 9.0 3n6r:C, 3n6r:E
17 6pej:A 257 52 0.0825 0.0661 0.3269 10.0 6pej:B, 6pej:C, 6pej:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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