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BioLiP
>protein
NLHLLRQKIEEQAAKYKHSVPKKCCYDGARVNFYETCEERVARVTIGPLCIRAFNECCTIANKIRKES

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4wb2:C 74 68 1.0000 0.9189 1.0000 5.33e-46 4wb2:A, 4wb3:A, 4wb3:C
2 5hcc:A 982 61 0.6029 0.0418 0.6721 4.11e-25 7ad6:A, 8ayh:A, 1cfa:A, 5hcd:A, 5hce:A
3 8cem:B 974 64 0.2941 0.0205 0.3125 1.06e-05
4 2z2p:A 293 38 0.1618 0.0375 0.2895 2.2 2z2p:B
5 8ki6:A 1580 44 0.2206 0.0095 0.3409 4.0
6 8ki8:A 1621 44 0.2206 0.0093 0.3409 4.1
7 8iwh:7 165 18 0.1324 0.0545 0.5000 4.2 8iwh:0
8 8ki7:A 2003 44 0.2206 0.0075 0.3409 4.7
9 8w9o:A 427 32 0.1618 0.0258 0.3438 9.0 8w9o:B
10 5zn7:A 680 41 0.1912 0.0191 0.3171 9.9 5zn7:C, 5zn7:D, 5zn7:F, 5zn7:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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