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BioLiP
>protein
NLGSKLLVGYWHNFDNGTGIIKLKDVSPKWDVINVSFGETGGDRSTVEFSPVYGTDADFKSDISYLKSKGKKVVLSIGGQ
NGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLGSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGPDFLLSMAP
ETAYVQGGYSAYGSIWGAYLPIIYGVKDKLTYIHVQHFNAGSGIGMDGNNYNQGTADYEVAMADMLLHGFPVGGNANNIF
PALRSDQVMIGLPAAPAAAPSGGYISPTEMKKALNYIIKGVPFGGKYKLSNQSGYPAFRGLMSWSINWDAKNNFEFSNNY
RTYFDGL

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kz6:A 327 327 0.9541 0.9541 0.9541 0.0 3n13:A, 3n15:A, 3n17:A, 3n18:A, 3n1a:A
2 4tx8:A 374 323 0.4190 0.3663 0.4241 2.14e-76
3 4hmd:A 528 325 0.2813 0.1742 0.2831 7.72e-30 4mb4:A, 4mb5:A
4 4axn:A 316 337 0.2722 0.2816 0.2641 1.50e-24 4axn:B
5 6idn:A 272 284 0.2141 0.2574 0.2465 4.73e-08
6 6jav:A 377 119 0.1070 0.0928 0.2941 1.13e-04 6jaw:A, 6jax:A, 6jay:A
7 4txe:A 288 112 0.1009 0.1146 0.2946 2.37e-04 2uy3:A, 2uy4:A, 2uy5:A
8 8fr9:B 374 113 0.0979 0.0856 0.2832 8.34e-04 8frb:D
9 3m7s:A 272 279 0.2080 0.2500 0.2437 0.001 3oih:A
10 6ve1:C 268 101 0.0887 0.1082 0.2871 0.001 1c8y:A, 6ve1:B, 6ve1:D
11 6jmb:A 374 176 0.1315 0.1150 0.2443 0.002
12 5nr8:A 377 182 0.1590 0.1379 0.2857 0.005 1hki:A, 1hkj:A, 1hkk:A, 1hkm:A, 6jjr:A, 6jk6:A, 5nra:A, 5nrf:A, 1waw:A, 1wb0:A, 6ze8:A, 6ze8:B, 6ze8:C, 6ze8:D, 6ze8:E, 6ze8:F
13 4r5e:A 343 66 0.0703 0.0671 0.3485 0.016
14 3fy1:A 377 115 0.0948 0.0822 0.2696 0.026 3fy1:B, 3rm4:A, 3rm4:B, 3rm8:A, 3rm8:B, 3rm9:A, 3rm9:B, 3rme:A, 3rme:B, 2ybt:A, 2ybt:B, 2ybt:C, 2ybt:D, 2ybt:E, 2ybt:F, 2ybu:A, 2ybu:B, 2ybu:C, 2ybu:D, 2ybu:E, 2ybu:F
15 4ac1:X 283 107 0.0765 0.0883 0.2336 0.036
16 6kst:B 372 70 0.0734 0.0645 0.3429 0.037 6kxl:A, 6kxl:B, 6kxm:A, 6kxm:B, 6kxn:A, 6kxn:B
17 2a3c:A 395 107 0.0948 0.0785 0.2897 0.053 2a3a:A, 2a3a:B, 2a3b:A, 2a3b:B, 2a3c:B, 2a3e:A, 2a3e:B, 3ch9:A, 3ch9:B, 3chc:A, 3chc:B, 3chd:A, 3chd:B, 3che:A, 3che:B, 3chf:A, 3chf:B, 2iuz:A, 2iuz:B, 1w9u:A, 1w9u:B, 1w9v:A, 1w9v:B
18 8ose:A 563 115 0.1009 0.0586 0.2870 0.077 8owf:A
19 6kpm:A 295 124 0.0948 0.1051 0.2500 0.078 6kpn:A, 6kpo:A
20 7akq:A 389 49 0.0581 0.0488 0.3878 0.16 6epb:A, 6ylj:A, 6yn4:A
21 6le7:A 381 48 0.0581 0.0499 0.3958 0.19 6le8:A
22 6bt9:B 626 129 0.1009 0.0527 0.2558 0.30 6bt9:A
23 6iry:A 468 81 0.0673 0.0470 0.2716 0.33 6irz:A, 6is0:A
24 8u9f:A 271 54 0.0550 0.0664 0.3333 0.37 8u48:B, 8u48:A
25 6hm1:A 386 48 0.0581 0.0492 0.3958 0.42
26 1llo:A 273 77 0.0734 0.0879 0.3117 0.65
27 6t9m:AAA 350 238 0.1804 0.1686 0.2479 0.68
28 1jne:A 400 65 0.0642 0.0525 0.3231 0.69
29 3orf:A 230 82 0.0795 0.1130 0.3171 0.73 3orf:B, 3orf:C, 3orf:D
30 1e6z:B 498 72 0.0550 0.0361 0.2500 0.78 7c34:A, 7c34:B, 7c92:A, 7c92:B, 7cb1:A, 7cb1:B, 1e6r:A, 1e6r:B, 1e6z:A, 1h0g:B, 1h0g:A, 1h0i:A, 1h0i:B, 6jk9:A, 6jk9:B, 6jkf:A, 6jkf:B, 1o6i:A, 1o6i:B, 1ogg:A, 1ogg:B, 1ur8:A, 1ur8:B, 1ur9:A, 1ur9:B, 1w1p:A, 1w1p:B, 1w1t:A, 1w1t:B, 1w1v:A, 1w1v:B, 1w1y:A, 1w1y:B, 3wd1:A, 3wd2:A, 3wd3:A, 3wd4:A, 4z2g:A, 4z2h:A, 4z2i:A, 4z2j:A, 4z2k:A, 4z2l:A
31 3g6m:A 388 50 0.0489 0.0412 0.3200 0.79
32 3a4w:A 301 61 0.0459 0.0498 0.2459 0.86 3a4w:B, 3a4x:A, 3a4x:B, 3afb:A, 3afb:B
33 8p5d:LW0 102 33 0.0367 0.1176 0.3636 1.0 8p60:LW0, 8p60:KW0, 7qca:LW0
34 3wqv:A 383 90 0.0612 0.0522 0.2222 1.2 3wqw:A
35 1ll4:A 392 98 0.0917 0.0765 0.3061 1.5 1ll4:B, 1ll4:C, 1ll4:D
36 4toq:A 273 290 0.2110 0.2527 0.2379 1.5 4toq:C
37 3n6r:G 646 41 0.0428 0.0217 0.3415 1.6 3n6r:I, 3n6r:K
38 8r42:B 362 47 0.0428 0.0387 0.2979 3.8 8r41:A, 8r41:B, 8r42:A, 8r4x:A, 8r4x:B, 8r4x:C, 8r4x:D
39 4tx6:B 310 46 0.0459 0.0484 0.3261 4.1 4tx6:A, 2xtk:A, 2xtk:B, 2xuc:A, 2xuc:B, 2xuc:C, 2xvn:A, 2xvn:B
40 8bzx:A 546 91 0.0734 0.0440 0.2637 4.2
41 3u7b:B 326 179 0.1254 0.1258 0.2291 5.3
42 7pcy:A 98 49 0.0581 0.1939 0.3878 5.5
43 3cgy:A 133 51 0.0428 0.1053 0.2745 6.6 3cgy:B, 3cgy:C
44 7cfc:C 179 25 0.0367 0.0670 0.4800 8.0 7cfc:A, 7cfc:B, 7cfc:D, 7cfc:E
45 1q19:A 500 73 0.0581 0.0380 0.2603 8.4 1q19:B, 1q19:C, 1q19:D
46 2aos:A 361 47 0.0520 0.0471 0.3617 8.9 2fdm:A, 4mav:A, 4ml4:A, 4nsb:A, 2olh:A, 4q7n:A, 5z05:A, 5z3s:A, 5z4w:A, 1zbc:A, 1zbk:A, 1zbv:A, 1zbw:A, 1zl1:A
47 1hl7:A 279 42 0.0367 0.0430 0.2857 9.3 1hl7:B
48 3vte:A 502 97 0.0795 0.0518 0.2680 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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