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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFY
DGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSH
TQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREF
GLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFS

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5uz4:Z 323 306 0.9425 0.9133 0.9641 0.0 4a2i:V, 7boi:W, 7nar:W, 5no2:Z, 5no3:Z, 5no4:Z, 2rcn:A, 2ykr:W
2 6h4d:A 274 301 0.4409 0.5036 0.4585 5.37e-89
3 1u0l:A 278 298 0.3546 0.3993 0.3725 5.58e-55 1u0l:B, 1u0l:C
4 2yv5:A 293 240 0.2971 0.3174 0.3875 1.67e-43
5 1t9h:A 287 296 0.3291 0.3589 0.3480 3.09e-42
6 6zhm:A 269 276 0.2620 0.3048 0.2971 1.16e-30 6zhl:A, 6zjo:A, 6zjo:B
7 8ipr:C 515 56 0.0671 0.0408 0.3750 0.008 8ipr:E
8 6mfu:A 216 78 0.0671 0.0972 0.2692 0.066 6mfu:B, 6mfu:C, 6mfu:D
9 3cnl:A 233 121 0.0895 0.1202 0.2314 0.073 3cnn:A, 3cno:A
10 7mit:E 1438 42 0.0543 0.0118 0.4048 0.12 7mjo:E, 7mjp:E, 7mjq:E, 7y1l:A
11 8pv1:Cd 462 138 0.1150 0.0779 0.2609 0.13 8pv2:Cd, 8pv3:Cd, 8pv4:Cd, 8pv5:Cd, 8pv6:Cd, 8pv7:Cd, 8pv8:Cd, 8pvk:Cd, 8pvl:Cd
12 2gj8:D 172 64 0.0767 0.1395 0.3750 0.26 2gj8:A, 2gj8:B, 2gj8:C, 2gj9:A, 2gj9:B, 2gj9:C, 2gj9:D, 2gja:A, 2gja:B
13 7szs:A 204 64 0.0639 0.0980 0.3125 0.33 7szs:B
14 3iev:A 302 63 0.0671 0.0695 0.3333 0.39 7c1o:A, 3r9w:A, 3r9x:A
15 5m7h:A 420 28 0.0447 0.0333 0.5000 0.41 4dcs:A, 4dct:A, 4dcu:A, 2hjg:A, 5mbs:A, 5x4b:A, 5x4b:B
16 8xoo:O 572 101 0.0927 0.0507 0.2871 0.47
17 8xon:O 593 101 0.0927 0.0489 0.2871 0.51 8xon:S, 8xon:R, 8xon:Q, 8xon:P, 8xon:T, 8xoo:R, 8xoo:Q, 8xoo:P, 8xoo:T, 8xoo:S
18 7y1j:A 1204 24 0.0447 0.0116 0.5833 0.56
19 2j3e:A 249 78 0.0767 0.0964 0.3077 0.57 3bb3:A, 3bb4:A, 3def:A
20 7y1n:A 1171 24 0.0447 0.0120 0.5833 0.60 7vlr:A, 7vls:A, 7vlt:A, 7vlu:A, 7y1k:A, 7y1m:A
21 9iuk:A 1335 78 0.0703 0.0165 0.2821 0.87 9iul:A, 9ium:A
22 7of1:m 229 80 0.0767 0.1048 0.3000 1.1
23 7am2:BV 199 70 0.0799 0.1256 0.3571 1.2
24 3pqc:B 194 65 0.0639 0.1031 0.3077 1.3 3pqc:A
25 8i9w:CL 397 100 0.0990 0.0781 0.3100 1.4 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL
26 8ips:B 588 25 0.0447 0.0238 0.5600 1.4 8ipt:A, 8ipt:E, 7zda:D, 7zdb:D, 7zdc:D, 7zde:D, 7zdf:D, 7zdg:D, 7zdk:D, 7zdl:D, 7zdr:D, 7zdt:D, 7zdu:D, 7zdv:D, 7zdw:D, 7ze5:D, 7zec:D
27 8dg5:A 1635 171 0.1438 0.0275 0.2632 1.5 8dg7:A
28 7sqc:1A 1639 60 0.0703 0.0134 0.3667 1.5
29 7c3k:B 389 119 0.0927 0.0746 0.2437 2.0 7c3k:A, 8jqz:A, 8jqz:B
30 7sqc:1C 1700 65 0.0671 0.0124 0.3231 2.0 7sqc:1D
31 6baa:E 1317 58 0.0639 0.0152 0.3448 3.3 6baa:F, 6baa:G, 6baa:H
32 5ykf:B 1309 47 0.0543 0.0130 0.3617 3.4 5ykf:D, 5ykf:F, 5ykf:H, 5ykg:B, 5ykg:D, 5ykg:F, 5ykg:H, 5yw8:B, 5yw8:D, 5yw8:F, 5yw8:H, 5yw9:B, 5yw9:D, 5yw9:F, 5yw9:H, 5ywa:B, 5ywa:D, 5ywa:F, 5ywa:H
33 6jb1:B 1366 47 0.0543 0.0124 0.3617 3.5 6jb1:D, 6jb1:F, 6jb1:H, 7wit:A, 5yw7:B, 5ywd:B
34 7u1s:E 1439 47 0.0543 0.0118 0.3617 3.5 6pza:C, 6pzi:G, 7tys:E, 7tyt:E, 7u1e:E, 7u1q:E, 7u24:E, 7u2x:E, 7u6y:E, 7u7m:E, 7uaa:E
35 6c3p:E 1359 47 0.0543 0.0125 0.3617 3.8 6c3p:H, 6c3p:G, 6c3p:F, 5ywb:B, 5ywb:D, 5ywb:F, 5ywb:H, 5ywc:B, 5ywc:D, 5ywc:F, 5ywc:H
36 6c3o:E 1290 47 0.0543 0.0132 0.3617 3.8 6c3o:H, 6c3o:G, 6c3o:F
37 7s5x:E 1412 47 0.0543 0.0120 0.3617 3.9 6pz9:C, 7s5v:E, 7s5y:E, 7s5z:E, 7s60:E, 7s61:E, 8ti1:E, 8ti1:H, 8ti1:G, 8ti1:F, 8ti2:E, 8ti2:H, 8ti2:G, 8ti2:F, 7w4o:B, 7w4o:D, 7w4o:F, 7w4o:H, 7w4p:B, 7w4p:D, 7w4p:F, 7w4p:H
38 8a8w:D 577 54 0.0671 0.0364 0.3889 4.0 8a8u:B, 8a8u:C, 8a8u:D, 8a8u:E, 8a8u:A, 8a8v:B, 8a8v:C, 8a8v:D, 8a8v:E, 8a8v:A, 8a8w:A, 8a8w:B, 8a8w:C, 8a8w:E
39 7pd3:z 311 99 0.0927 0.0932 0.2929 4.0 8pk0:z, 8qsj:z
40 7o9k:C 255 99 0.0927 0.1137 0.2929 4.0 7o9m:C
41 3qkt:B 319 47 0.0607 0.0596 0.4043 4.2 4ncj:A, 4ncj:B, 3qkt:D, 3qku:B
42 6n8j:m 378 127 0.1054 0.0873 0.2598 4.3
43 2awn:D 301 25 0.0383 0.0399 0.4800 4.4 2awo:D
44 6yxy:EQ 471 140 0.1246 0.0828 0.2786 4.5
45 5cyp:D 227 49 0.0543 0.0749 0.3469 4.5
46 3qkt:A 339 47 0.0607 0.0560 0.4043 4.5 4ncj:C, 4ncj:D, 3qkt:C
47 2awn:A 330 25 0.0383 0.0364 0.4800 4.7
48 3qku:A 359 47 0.0607 0.0529 0.4043 4.8 1f2u:A, 1f2u:D, 1f2u:C, 1f2u:B, 3qks:A, 3qks:B
49 1wf3:A 296 30 0.0447 0.0473 0.4667 5.7
50 7s5e:D 207 52 0.0607 0.0918 0.3654 5.9 7s5e:A, 7s5e:B, 7s5e:C, 7s5e:E, 7s5e:F, 7s5e:G, 7s5e:H, 6wct:A, 6wct:B, 6wct:C, 6wct:D
51 4hlu:C 249 25 0.0383 0.0482 0.4800 5.9 4hlu:D, 4zir:B
52 8sgd:A 291 70 0.0735 0.0790 0.3286 6.0 8fwp:A, 8pfh:A, 8sgd:C
53 2awn:B 374 25 0.0383 0.0321 0.4800 6.0 2awo:A, 2awo:B, 2awo:C, 4ki0:A, 4ki0:B, 3puv:A, 3puv:B, 3puw:A, 3puw:B, 3pux:A, 3pux:B, 3puy:A, 3puy:B, 3puz:A, 3puz:B, 1q12:A, 1q12:B, 1q12:C, 1q12:D, 2r6g:A, 2r6g:B, 3rlf:A, 3rlf:B
54 6uqq:C 280 64 0.0607 0.0679 0.2969 6.4 3sop:A, 3sop:B, 6uqq:D, 4z51:A, 4z54:A, 4z54:B
55 3w68:C 252 82 0.0703 0.0873 0.2683 7.0
56 6jbj:A 565 92 0.0799 0.0442 0.2717 7.2 6jbj:B
57 7p7q:0 534 41 0.0479 0.0281 0.3659 7.3 7p7r:0, 7p7s:0, 7p7t:0
58 2anb:A 206 25 0.0415 0.0631 0.5200 7.7 2an9:A, 2an9:B, 2f3r:A, 2f3r:B, 2f3t:A, 2f3t:B, 2f3t:E, 2f3t:F
59 2cxx:A 184 19 0.0383 0.0652 0.6316 7.9 2cxx:B, 2cxx:C
60 7cb5:B 467 39 0.0543 0.0364 0.4359 8.4 7cb2:A, 7cb2:B, 7cb2:C, 7cb2:D, 7cb5:A, 7cb5:C, 7cb5:D
61 8jzk:A 214 107 0.0767 0.1121 0.2243 8.4
62 7am2:BT 300 85 0.0607 0.0633 0.2235 8.5
63 3ieu:A 293 72 0.0767 0.0819 0.3333 8.9 3ieu:B
64 2awn:C 344 24 0.0383 0.0349 0.5000 9.0
65 5cyp:A 248 87 0.0831 0.1048 0.2989 9.5 5cyp:B, 5cyp:C
66 2boa:A 404 57 0.0447 0.0347 0.2456 9.5 4a94:A, 4a94:B, 4bd9:A, 2bo9:A, 2bo9:C, 2boa:B, 2pcu:A
67 3uk6:L 233 65 0.0607 0.0815 0.2923 9.7
68 7q3e:D 226 36 0.0447 0.0619 0.3889 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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