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BioLiP
>protein
NKVKSCPSGEDCGIGCCYHGCSATDYGCWDGSSYAPYSYTY

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tq1:H 41 41 1.0000 1.0000 1.0000 4.87e-24
2 9bcz:A 606 33 0.2927 0.0198 0.3636 0.12
3 8t7c:A 1001 32 0.2683 0.0110 0.3438 0.23
4 1djg:B 561 33 0.2683 0.0196 0.3333 0.27 1djg:A, 1djh:A, 1djh:B, 1dji:A, 1dji:B, 1djw:A, 1djw:B, 1djx:A, 1djx:B, 1djy:A, 1djy:B, 1djz:A, 1djz:B
5 7sna:A 302 27 0.2927 0.0397 0.4444 0.45 2amp:A, 2amp:B, 5eu8:A, 4f49:A, 4f49:B, 4f49:C, 4f49:D, 1p9u:B, 1p9u:F, 7smv:A, 7smv:B, 7sna:B, 7xjw:A, 7xjw:B, 7xjw:C, 7xjw:D, 7xjw:E, 7xjw:F, 7xjw:G, 7xjw:H, 4zro:A, 4zro:B, 4zro:C, 4zro:D
6 6pbc:A 1070 24 0.2195 0.0084 0.3750 0.55
7 7t8t:A 1086 24 0.2195 0.0083 0.3750 0.55
8 7z3j:A 1119 24 0.2195 0.0080 0.3750 0.55 2fci:A, 4k45:A, 7nxe:A, 2pld:A, 2ple:A, 5tq1:A, 5tqs:A, 5tqs:B, 5tqs:D, 5tqs:C, 1ywo:A
9 6pmp:C 617 21 0.1951 0.0130 0.3810 0.98 6pmp:A, 6pmp:B, 6pmp:D
10 6k3g:B 356 36 0.2683 0.0309 0.3056 2.0 6kj5:A
11 2a19:C 203 10 0.1707 0.0345 0.7000 3.9
12 8qel:B 267 10 0.1707 0.0262 0.7000 4.0 2a19:B, 6d3k:B, 6d3k:A, 6d3k:C
13 4rap:E 390 15 0.2195 0.0231 0.6000 4.9 4rap:A, 4rap:D, 4rap:G, 4rap:K, 4rb4:K, 4rb4:L, 4rb4:C, 4rb4:D, 4rb4:E, 4rb4:H, 4rb4:B, 4rb4:F, 4rb4:G, 4rb4:I, 4rb4:J, 4rb4:A
14 3qr0:A 781 17 0.1707 0.0090 0.4118 7.0 3qr1:A, 3qr1:D
15 5tc5:A 286 16 0.2195 0.0315 0.5625 8.0 1cb0:A, 1cg6:A, 6dyz:A, 6dz0:A, 6dz2:A, 6dz2:B, 6dz2:C, 6dz3:A, 6dz3:B, 6dz3:C, 5eub:A, 1k27:A, 3ozc:A, 3ozd:A, 3ozd:B, 1sd1:A, 1sd2:A, 5tc5:B, 5tc5:C, 5tc6:A, 5tc7:A, 5tc8:A
16 8q7h:A 1403 17 0.1707 0.0050 0.4118 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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