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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRNKFNMLASTGQGAGGLLLAGHTD
TVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTALRP
DCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPTLNLG
HIHGGDASNRICAWCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLG
AKTEVVNYCTEAPFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELITQVIHHFCWH

The query sequence (length=381) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8uw6:B 381 381 1.0000 1.0000 1.0000 0.0 7rsf:A, 7rsf:B, 8uw6:A, 8uw6:C, 8uw6:D
2 5vo3:A 380 259 0.2047 0.2053 0.3012 1.46e-20 3ic1:A, 3ic1:B, 3isz:A, 3isz:B
3 7uoi:A 383 318 0.2310 0.2298 0.2767 9.29e-20 8vkt:A
4 2f7v:A 360 314 0.2152 0.2278 0.2611 5.92e-17
5 7lgp:B 377 259 0.1969 0.1989 0.2896 2.41e-16 7lgp:A
6 7t1q:A 377 262 0.1942 0.1963 0.2824 9.44e-16 8f8o:A, 8f8o:B, 7t1q:B
7 4h2k:A 258 174 0.1496 0.2209 0.3276 2.07e-15 4h2k:B
8 4o23:A 376 258 0.1759 0.1782 0.2597 3.04e-14 4o23:B, 4ppz:A, 4pqa:A, 5uej:A, 5uej:B
9 3pfo:A 426 230 0.1706 0.1526 0.2826 3.58e-13 3pfo:B
10 2pok:A 458 119 0.1076 0.0895 0.3445 1.89e-10 2pok:B
11 1cg2:A 389 230 0.1785 0.1748 0.2957 3.51e-09 1cg2:B, 1cg2:C, 1cg2:D, 6xj5:A, 6xj5:B, 6xj5:C, 6xj5:D, 6xj5:E, 6xj5:F, 6xj5:G, 6xj5:H
12 4op4:B 265 173 0.1391 0.2000 0.3064 1.51e-08 4op4:A
13 1lfw:A 468 162 0.1312 0.1068 0.3086 4.77e-08
14 7m6u:B 392 203 0.1601 0.1556 0.3005 1.01e-07 7m6u:A, 7m6u:C, 7m6u:D
15 5xoy:A 341 178 0.1312 0.1466 0.2809 4.44e-07
16 3rza:A 373 370 0.2178 0.2225 0.2243 5.04e-07 3rza:B
17 4mmo:A 437 170 0.1155 0.1007 0.2588 1.27e-05
18 3dlj:A 471 44 0.0604 0.0488 0.5227 2.20e-05 3dlj:B
19 1q7l:A 192 115 0.0787 0.1562 0.2609 3.52e-05 1q7l:C
20 2zof:A 478 64 0.0682 0.0544 0.4062 4.97e-05 4ruh:A, 4ruh:B, 2zof:B, 2zog:A, 2zog:B
21 3mru:A 490 154 0.1129 0.0878 0.2792 0.18 3mru:B
22 8p0t:M 212 34 0.0289 0.0519 0.3235 0.68 8p0t:a
23 7vru:B 494 44 0.0394 0.0304 0.3409 3.6 7vs4:B
24 7dkm:A 306 26 0.0289 0.0359 0.4231 4.5 7cvp:B, 6cwa:A, 6cwa:B, 7dkm:B, 7ewh:A, 7ewh:B, 2g76:A, 2g76:B, 5n53:B, 5n53:A, 5n6c:A, 5n6c:B, 5nzo:B, 5nzo:A, 5nzp:B, 5nzp:A, 5nzq:B, 5nzq:A, 5ofm:B, 5ofm:A, 5ofv:B, 5ofv:A, 5ofw:B, 5ofw:A, 6plf:A, 6plf:B, 6plg:A, 6plg:B, 6plg:C, 6plg:D, 6plg:E, 6plg:F, 6plg:G, 6plg:H, 6rih:A, 6rih:B, 6rj2:A, 6rj2:B, 6rj3:A, 6rj3:B, 6rj5:A, 6rj5:B, 6rj6:A, 6rj6:B, 7va1:B, 7va1:A, 7va1:C, 7va1:D
25 4a37:B 376 105 0.0735 0.0745 0.2667 5.6 4a37:A, 4a38:A, 4a38:B, 4a39:A, 4a39:B
26 7cvp:A 254 26 0.0289 0.0433 0.4231 5.7
27 6g47:A 171 59 0.0420 0.0936 0.2712 6.5 6g47:C, 4xl8:A, 4xl8:B, 4xl8:C
28 8id1:A 780 82 0.0525 0.0256 0.2439 8.7
29 6g4g:C 742 41 0.0262 0.0135 0.2439 9.3
30 5tp4:B 409 137 0.1024 0.0954 0.2847 9.4 5tp4:A
31 6g4g:B 759 41 0.0262 0.0132 0.2439 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218