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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESD
IIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQILHQVSITNSLKDI
AEAQLMEATYKIEDVLEGKIKYKTTDYQERAYQTLKLILENYDSEHFEKMYWEKKRLFEANSLEEWYYVE

The query sequence (length=230) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2oys:A 230 230 1.0000 1.0000 1.0000 1.85e-169 2oys:B
2 6dxp:A 206 85 0.1000 0.1117 0.2706 0.028 6dxp:C, 6dxp:B, 6dxp:D, 8h4j:A, 8h4j:B, 8h4j:C, 8h4j:D, 8h4j:E, 8h4j:F, 8h4j:G, 8h4j:H, 7n2w:A, 7n2w:B, 7n2w:C, 7n2w:D
3 4ese:A 193 79 0.0957 0.1140 0.2785 0.059
4 7q6n:D 204 63 0.0739 0.0833 0.2698 0.079 3b6i:A, 3b6i:B, 3b6j:A, 3b6j:B, 3b6k:A, 3b6k:B, 3b6m:A, 3b6m:B, 4dy4:A, 4dy4:C, 5f12:A, 5f12:B, 7q6n:A, 7q6n:B, 7q6n:C, 2r96:A, 2r96:C, 2r97:A, 2r97:C, 4yqe:A, 4yqe:B, 3zho:A, 3zho:B
5 1t5b:A 199 83 0.0913 0.1055 0.2530 0.13 1t5b:B
6 7n2x:A 201 83 0.0870 0.0995 0.2410 0.20 2d5i:A, 1v4b:A, 2z98:A, 2z9b:A, 2z9c:A, 2z9d:A, 2z9d:B
7 4laf:A 207 33 0.0522 0.0580 0.3636 0.96 4laf:B, 4laf:C, 4laf:D
8 1fuj:A 221 67 0.0609 0.0633 0.2090 1.3 1fuj:B, 1fuj:C, 1fuj:D
9 8t4e:B 551 102 0.1130 0.0472 0.2549 1.7 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B
10 4c0w:A 200 39 0.0522 0.0600 0.3077 1.9 4c0x:A, 4c14:A
11 3r6w:A 211 61 0.0870 0.0948 0.3279 2.8 3keg:A, 3keg:B, 3lt5:A, 3lt5:B, 4n65:A, 4n65:B, 4n9q:A, 4n9q:B, 3r6w:B, 2v9c:A, 2v9c:B
12 3cp5:A 116 60 0.0652 0.1293 0.2500 3.7 6cuk:A, 6cun:A
13 4gi5:B 261 70 0.0696 0.0613 0.2286 3.9 4gi5:A
14 7a62:C 393 48 0.0609 0.0356 0.2917 6.9 7a62:A, 7a62:B, 7a62:D, 8abx:A, 7ah4:A, 7ah4:B, 7ah5:A, 7ah5:B, 7ah6:A, 7ah6:B, 6azu:A, 6azu:B, 6azu:C, 6azu:D, 6azv:A, 6azv:B, 6azv:C, 6azv:D, 6azw:A, 6azw:B, 7b1o:A, 7b1o:B, 6cxu:A, 6cxu:B, 6cxv:A, 6cxv:B, 2d0t:A, 2d0t:B, 2d0u:A, 2d0u:B, 6dpq:A, 6dpq:B, 6dpr:A, 6dpr:B, 7e0o:A, 7e0o:B, 7e0p:A, 7e0p:B, 7e0q:A, 7e0q:B, 7e0s:A, 7e0s:B, 7e0t:A, 7e0t:B, 7e0u:A, 7e0u:B, 6e35:A, 6e35:B, 6e40:A, 6e40:B, 6e40:C, 6e40:D, 6e41:A, 6e41:B, 6e41:C, 6e41:D, 6e42:A, 6e42:B, 6e42:C, 6e42:D, 6e43:A, 6e43:B, 6e43:C, 6e43:D, 6e44:A, 6e44:B, 6e44:C, 6e44:D, 6e45:A, 6e45:B, 6e45:C, 6e45:D, 6e46:A, 6e46:B, 6e46:C, 6e46:D, 5ek2:A, 5ek2:B, 5ek3:A, 5ek3:B, 5ek4:A, 5ek4:B, 5etw:A, 5etw:B, 6f0a:A, 6f0a:C, 8fur:A, 8fur:B, 8fur:C, 8fur:D, 8i7l:A, 8i7l:B, 6kof:A, 6kof:B, 6kps:A, 6kps:B, 6kw7:A, 6kw7:B, 7m63:A, 7m63:B, 7m7d:A, 7m7d:B, 6mq6:A, 6mq6:B, 7nge:A, 7nge:B, 7nge:C, 7nge:D, 6o3i:A, 6o3i:B, 7p0n:A, 7p0n:B, 7p0n:C, 7p0n:D, 7p0r:A, 7p0r:B, 7p0r:C, 7p0r:D, 4pk5:A, 4pk5:B, 4pk6:A, 4pk6:B, 6pu7:A, 6pu7:B, 6pz1:A, 6pz1:B, 6r63:A, 6r63:B, 7rrb:A, 7rrb:B, 7rrc:A, 7rrc:B, 7rrd:A, 7rrd:B, 4u72:A, 4u72:B, 4u74:A, 4u74:B, 6ubp:A, 6ubp:B, 6v52:A, 6v52:B, 5whr:A, 5whr:B, 6wjy:A, 6wjy:B, 5wmu:A, 5wmu:B, 5wmv:A, 5wmv:B, 5wmw:A, 5wmw:B, 5wmx:A, 5wmx:B, 5wn8:A, 5wn8:B, 6wpe:A, 6wpe:B, 6x5y:A, 6x5y:B, 5xe1:A, 5xe1:B, 7yxt:A, 7yxt:B, 7yxt:C, 7yxt:D, 7z2l:A, 7z2l:B, 7z2l:D, 7z2l:C, 7zv3:A, 7zv3:B
15 5z9o:A 373 39 0.0478 0.0295 0.2821 9.8 5z9o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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