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BioLiP
>protein
NKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i0r:v 173 47 1.0000 0.2717 1.0000 1.73e-30 7abg:F, 7abh:F, 6ff4:7, 6ff7:7, 8i0p:v, 8i0t:v, 7q4o:1, 7q4p:1, 8qo9:G, 6qx9:A2, 8qxd:8, 8r0a:8, 8r0b:8, 8rm5:8, 7vpx:B
2 8ch6:I 185 47 0.9362 0.2378 0.9362 7.00e-26 7abi:F, 7onb:M, 7qtt:I, 5z56:v, 5z57:v
3 6g90:U 196 44 0.4468 0.1071 0.4773 7.17e-08 7oqb:U, 7oqe:U
4 5nrl:U 196 44 0.4468 0.1071 0.4773 7.95e-08
5 7dco:v 207 44 0.4468 0.1014 0.4773 9.69e-08 5gm6:I, 5zwm:v, 5zwo:v
6 8qzs:r 114 36 0.2766 0.1140 0.3611 0.005 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
7 8idf:A 459 36 0.2979 0.0305 0.3889 0.043
8 1xed:A 111 39 0.2553 0.1081 0.3077 0.40 1xed:B
9 1zu1:A 127 30 0.2340 0.0866 0.3667 0.45
10 8ost:A 390 33 0.2553 0.0308 0.3636 0.55
11 6iw6:A 438 33 0.2553 0.0274 0.3636 0.55 6iw6:B
12 8pv1:Cb 101 32 0.2553 0.1188 0.3750 0.59 8pv2:Cb, 8pv3:Cb, 8pv4:Cb, 8pv5:Cb, 8pv6:Cb, 8pv7:Cb, 8pv8:Cb, 8pvk:Cb, 8pvl:Cb
13 6jmt:D 350 36 0.1915 0.0257 0.2500 1.5 6jmt:C, 6jmt:E, 6jmt:F, 6jmt:A, 6jmt:B
14 7mo3:B 38 31 0.1915 0.2368 0.2903 2.2 7mo3:D, 7mo4:B, 7mo4:D
15 2ebv:A 57 20 0.1702 0.1404 0.4000 3.8
16 8q7n:X 81 33 0.2340 0.1358 0.3333 4.7 8h6k:4I, 8h6l:4I, 8qo9:X, 8qpe:X, 8qzs:X
17 2crr:A 141 33 0.1702 0.0567 0.2424 4.9
18 2iqj:B 123 34 0.1702 0.0650 0.2353 6.3 2iqj:A
19 3lvq:E 420 32 0.1915 0.0214 0.2812 7.0 2b0o:E, 2b0o:F, 2b0o:G, 2b0o:H, 3lvr:E
20 8opt:A 783 32 0.1915 0.0115 0.2812 7.7 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
21 7mex:A 1737 19 0.1702 0.0046 0.4211 8.8 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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