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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLML
PDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFL
PFSLPFRLGGHGKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCVFKKIERHSIHWPCRLTIGSNLSIRIA
AYKSILQERVKKTWTVVDAKTLKKEDIQKETVYCLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSV
LGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHNYECLVYV
QLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPR
EPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEA

The query sequence (length=520) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6zhe:C 705 527 1.0000 0.7376 0.9867 0.0 8asc:B, 8asc:F, 8asc:L, 8asc:P, 6erf:B, 6erf:D, 6erf:F, 6erf:H, 6erg:E, 6erg:B, 6erh:B, 6erh:D, 8eza:K, 8eza:B, 8ezb:B, 8ezb:K, 1jey:B, 7k1k:C, 7lsy:B, 7lsy:K, 7lt3:B, 7lt3:K, 7nfe:C, 7su3:C, 5y3r:B, 7z6o:B, 6zha:C, 6zhe:H, 7zt6:B, 7zvt:B, 7zwa:B
2 8bh3:C 668 527 1.0000 0.7784 0.9867 0.0 8bh3:L, 8bhy:C, 8bhy:L, 8bot:H, 8bot:U, 7k0y:C, 7nfc:H, 7sgl:C, 7z87:C, 7z88:C
3 8bhv:b 650 518 0.9750 0.7800 0.9788 0.0 8bhv:j, 8bot:C, 7zyg:B
4 7nfc:C 477 515 0.9173 1.0000 0.9262 0.0
5 6tyw:A 218 219 0.2731 0.6514 0.6484 2.79e-99 6tyt:A, 6tyu:A, 6tyv:A, 6tyx:A, 6tyx:B, 6tyz:A
6 5y58:B 568 144 0.0673 0.0616 0.2431 0.035 5y58:D, 5y58:F, 5y59:B
7 1u2z:C 385 87 0.0404 0.0545 0.2414 0.24 7k6p:K, 7k6q:K, 1u2z:A, 1u2z:B
8 7uuk:C 276 114 0.0538 0.1014 0.2456 0.30 7jm1:A, 7jm1:C, 7jm1:B, 7jm2:A, 7jm2:C, 7jm2:B, 7uuj:A, 7uuj:C, 7uuj:B, 7uuk:A, 7uuk:B, 7uul:A, 7uul:B, 7uul:D, 7uul:C, 7uul:F, 7uul:E, 7uum:A, 7uun:A, 7uuo:B
9 5g5l:A 1480 66 0.0346 0.0122 0.2727 4.4 6h67:A, 6h68:A, 5m3m:A, 5m5y:A, 5m64:A, 5n5y:A, 5n5z:A, 5n60:A, 6rqt:A, 6rrd:A, 6rui:A, 6ruo:A, 6rwe:A, 6tps:A
10 4ci0:A 385 33 0.0269 0.0364 0.4242 4.9 4omf:A
11 7k0n:A 464 50 0.0385 0.0431 0.4000 6.8 7cqi:S, 7cqk:S, 7k0i:A, 7k0i:D, 7k0j:A, 7k0k:A, 7k0l:A, 7k0n:E, 7k0o:A, 7k0o:E, 7k0p:A, 7k0p:E, 7k0q:A, 6m4n:A, 6m4n:E, 7yiy:A, 7yj2:A
12 6ktq:A 399 33 0.0250 0.0326 0.3939 9.1 6ktq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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