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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NIYYNPFKPQDKSYFAGYFNAAMENTDSVFRELGKRLKGKEYTSENFFDAIFKENISLVEYERYVKLLSDYFPMARLLDK
KEVPIKERKENFKKNFKGIIKAVRDLRNFYTHKEHGEVEITDEIFGVLDEMLKSTVLTVKKKKVKTDKTKEILKKSIEKQ
LDILCQKKLEYLRDTARKIEEKRRNQRERGEKELVAPFKYSDKRDDLIAAIYNDAFDVYIDKKKDSLKESSKAKYNTKSD
PQQEEGDLKIPISKNGVVFLLSLFLTKQEIHAFKSKIAGFKATVIDEATVSEATVSHGKNSICFMATHEIFSHLAYKKLK
RKVRTAAEQLSVYAKETLMMQMLDELSKVPDVVYQNLSEDVQKTFIEDWNEYLKENNTMEEEQVIHPVIRKRYEDKFNYF
AIRFLDEFAQFPTLRFQVHLGNYLHDSRPKENLISDRRIKEKITVFGRLSELEHKKALFIKNTETNEDREHYWEIFPNPN
YDFPKENISVNDKDFPIAGSILDREKQPVAGKIGIKVKLLNQQYVSEVDKAVKAHQLKQRKASKPSIQNIIEEIVPINES
NPKEAIVFGGQPTAYLSMNDIHSILYEFFDKWEKKKEKLEKKGEKELRKEIGKELEKKIVGKIQAQIQQIIDKDTNAKIL
KPYQDGNSTAIDKEKLIKDLKQEQNILQKLKDEQTVREKEYNDFIAYQDKNREINKVRDRNHKQYLKDNLKRKYPEAPAR
KEVLYYREKGKVAVWLANDIKRFMPTDFKNEWKGEQHSLLQKSLAYYEQCKEELKNLLPEKVFQHLPFKLGGYFQQKYLY
QFYTCYLDKRLEYISGLVQQAENFKSENKVFKKVENECFKFLKKQNYTHKELDARVQSILGYPIFLERGFMDEKPTIIKG
KTFKGNEALFADWFRYYKEYQNFQTFYDTENYPLVELEKKQADRKRKTKIYQQKKNDVFTLLMAKHIFKSVFKQDSIDQF
SLEDLYQSREERLGNQERARQTGERNTNYIWNKTVDLKLCDGKITVENVKLKNVGDFIKYEYDQRVQAFLKYEENIEWQA
FLIEEENYPYVVEREIEQYEKVRREELLKEVHLIEEYILEKVKDKEILKKGDNQNFKYYILNGLLKQLKNEDVESYKVFN
LNTEPEDVNINQLKQEATDLEQKAFVLTYIANKFAHNQLPKKEFWDYCQEKYGKIEKEKTYAEYFAEVFKKEKEALIKL

The query sequence (length=1199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6aay:A 1199 1199 1.0000 1.0000 1.0000 0.0
2 6dtd:A 1053 181 0.0425 0.0484 0.2818 8.64e-09
3 6dtd:A 1053 104 0.0242 0.0275 0.2788 0.74
4 7lxd:A 1190 89 0.0192 0.0193 0.2584 1.9 6v8p:A
5 8z9x:B 567 81 0.0192 0.0406 0.2840 2.1 8z9x:A
6 4ysn:C 448 65 0.0183 0.0491 0.3385 4.0 5ll3:A, 5ll3:B, 5ll3:C, 5ll3:D, 5wya:A, 5wya:B, 5wya:C, 5wya:D, 5wyf:A, 5wyf:B, 5wyf:C, 5wyf:D, 4ysn:A, 4ysn:B, 4ysn:D
7 8i16:A 639 27 0.0117 0.0219 0.5185 4.2
8 4lev:A 369 132 0.0250 0.0813 0.2273 4.3 7c0m:K, 7c0m:k, 6ct9:A, 6cta:A, 6edb:A, 6edc:A, 7ftf:A, 7ftg:A, 7ftg:B, 7fth:A, 7fti:A, 7ftj:A, 7ftk:A, 7ftk:B, 7ftl:A, 7ftm:A, 7ftn:A, 7fto:A, 7ftp:A, 7ftq:A, 7ftr:A, 7fts:A, 7ftt:A, 7ftt:B, 7ftu:A, 7ftv:A, 7ftw:A, 7ftx:A, 7fty:A, 7ftz:A, 7ftz:B, 7fu0:A, 7fu1:A, 7fu2:A, 7fu3:A, 7fu4:A, 7fu5:A, 7fu5:B, 7fu6:A, 7fu7:A, 7fu8:A, 7fu9:A, 7fua:A, 7fub:A, 7fuc:A, 7fud:A, 7fud:B, 7fue:A, 7fuf:A, 7fug:A, 7fuh:A, 7fui:A, 7fuj:A, 7fuk:A, 7ful:A, 7fum:A, 7fun:A, 7fuo:A, 7fup:A, 7fuq:A, 7fur:A, 8imf:B, 8img:A, 8img:B, 4km5:A, 4lev:B, 4lew:B, 4lew:A, 6lrc:B, 6lrc:A, 6lre:B, 6lrk:A, 6lrk:B, 6nao:A, 6nao:B, 6nfg:A, 6nfg:B, 6nfo:A, 6nfo:B, 6o47:A, 4o67:A, 4o67:B, 4o68:A, 4o69:A, 8okx:A, 8ol1:K, 5v8o:A, 5v8o:B, 5vdo:A, 5vdo:B, 5vdp:A, 5vdp:B, 5vdq:A, 5vdq:B, 5vdr:A, 5vdr:B, 5vds:B, 5vdt:A, 5vdt:B, 5vdu:A, 5vdu:B, 5vdv:A, 5vdv:B, 5vdw:A, 5vdw:B, 6y5d:K, 6y5d:L, 6y5e:K
9 4nz2:A 464 149 0.0309 0.0797 0.2483 6.2 4nz2:B
10 1bda:A 265 92 0.0225 0.1019 0.2935 8.4 1a5h:A, 1a5h:B, 1bda:B, 1rtf:B
11 5ed8:A 245 62 0.0133 0.0653 0.2581 9.7 4dxr:A, 4dxs:A, 4fi9:A, 6wmd:A, 6wme:A, 6wmf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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