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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NITKNTEDILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSNFTYLYLIDP
PEYFKEESKFFNTQSGKFVMLYADEEGIKAIQASDEIANLQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAIP
IFDRKNQVVGVIGMTLDFSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKAISEGK
NGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKK

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4wy9:A 285 285 1.0000 1.0000 1.0000 0.0
2 6fu4:A 297 132 0.1123 0.1077 0.2424 0.016 6fu4:B, 6fu4:C, 6fu4:D
3 6py3:B 238 91 0.0842 0.1008 0.2637 0.021 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A
4 5lt9:B 253 63 0.0702 0.0791 0.3175 0.12 5lt9:A, 5lto:A, 5lto:B
5 5ltx:A 243 74 0.0737 0.0864 0.2838 0.32 5ltx:B, 5t65:A, 5t65:B, 5t7m:A, 5t7m:B
6 5ltv:D 226 85 0.0842 0.1062 0.2824 0.53 5ltv:A, 5ltv:B, 5ltv:E
7 4ac9:C 471 149 0.1193 0.0722 0.2282 0.82 4ac9:A, 4ac9:B, 4aca:B, 4aca:C, 4acb:A, 4acb:B, 4acb:C
8 4ktp:A 767 60 0.0737 0.0274 0.3500 2.4 4ktp:B, 4ktr:A, 4ktr:D, 4ktr:E, 4ktr:F, 4ktr:G, 4ktr:H
9 7nmi:B 488 38 0.0561 0.0328 0.4211 3.8 1j55:A
10 8h9d:A 1114 54 0.0772 0.0197 0.4074 4.0
11 8i54:A 1113 54 0.0772 0.0198 0.4074 4.3
12 3vb9:B 462 43 0.0491 0.0303 0.3256 4.5 3vb9:D
13 6en3:A 934 47 0.0596 0.0182 0.3617 7.1 8a49:C, 4nuy:A, 4nuz:A
14 2ero:A 426 57 0.0596 0.0399 0.2982 8.0 2ero:B, 2erp:A, 2erp:B, 2erq:A, 2erq:B
15 4tn3:B 362 75 0.0737 0.0580 0.2800 8.2 5k3q:A, 5k3q:B, 5k3q:C, 5k3q:D, 4tn3:A, 5w9a:A, 5w9a:B
16 6esq:I 347 28 0.0316 0.0259 0.3214 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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