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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVGAKPLSGFSQIRHEIPMLSL
DNAFSDAEFNAFVARIEDRLILLPAPLTFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLT
DNPPARLEVRGEVFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTHYA
RLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPAQEEL
TL

The query sequence (length=322) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3uq8:A 322 322 1.0000 1.0000 1.0000 0.0 3bac:A, 3pn1:A, 4uco:A, 4ucr:A, 4ucs:A, 4uct:A, 4ucu:A, 4ucv:A, 4ufz:A
2 2owo:A 586 322 0.6087 0.3345 0.6087 1.01e-144 4glx:A, 5tt5:A
3 4lh6:A 322 319 0.4938 0.4938 0.4984 5.97e-104 3ba8:A, 3ba9:A, 3baa:A, 3bab:A, 4eeq:A, 4efb:A, 4efe:A, 8jyd:A, 4lh7:A, 1ta8:A, 1tae:A, 1tae:B, 1tae:C, 1tae:D
4 4cc5:A 308 315 0.4596 0.4805 0.4698 8.16e-99 4cc6:A, 5fpo:A, 5fpr:A
5 1v9p:A 584 320 0.4534 0.2500 0.4562 5.89e-80 1dgs:A, 1dgs:B, 1v9p:B
6 3sgi:A 408 324 0.4379 0.3456 0.4352 3.53e-79 7k72:A, 7k72:B, 7k72:C, 7k72:D, 6kdu:A, 6kjm:A, 6kkv:A, 6krh:A, 6ksc:A, 6ksd:A, 6lw8:A, 1zau:A
7 4glw:B 281 281 0.3820 0.4377 0.4377 1.58e-76 4glw:A
8 8ak4:A 513 257 0.3168 0.1988 0.3969 1.25e-50
9 8jh1:B 462 120 0.1056 0.0736 0.2833 0.17 8jbb:A, 8jbb:B, 8jh1:A
10 7l5s:A 771 178 0.1460 0.0610 0.2640 0.81 7l5i:A
11 7z0s:E 532 85 0.0839 0.0508 0.3176 1.2 7z0t:E
12 6k82:B 282 19 0.0373 0.0426 0.6316 1.8 6k83:B, 6k83:A, 6k83:C, 6k83:D, 6k83:E, 6k83:F, 6k83:G, 6k83:H, 6k85:B, 6k86:B, 6k89:B, 6k8a:A, 6k8a:B, 6k8b:A, 6k8b:B
13 2xcu:A 353 59 0.0683 0.0623 0.3729 2.3 2xcu:B, 2xcu:C, 2xcu:D
14 3p5n:A 168 37 0.0466 0.0893 0.4054 4.1 3p5n:B
15 7n7g:A 138 64 0.0559 0.1304 0.2812 5.4 7n7g:B
16 4mlv:A 290 113 0.0839 0.0931 0.2389 5.7 4mlq:A, 5ov5:A, 5ov6:A
17 7k5j:I 979 75 0.0621 0.0204 0.2667 5.9 7k5j:D, 7k5j:A, 7k5j:C, 7k5j:G, 7k5j:K, 7k5j:S, 5tr4:A, 5tr4:C
18 5l6i:A 1007 75 0.0621 0.0199 0.2667 6.4 3cmm:A, 3cmm:C, 5l6h:A, 5l6h:C, 5l6i:C, 5l6j:A, 5l6j:C, 4nnj:A, 4nnj:C, 6nya:A, 6nya:D, 6zhu:A, 6zhu:E, 6zhu:C, 6zhu:G, 7zh9:A
19 2eax:C 164 52 0.0528 0.1037 0.3269 6.6
20 8he6:B 120 74 0.0559 0.1500 0.2432 8.1
21 8hmg:B 290 20 0.0342 0.0379 0.5500 9.2 8hmg:A, 8hmg:C, 8hmg:D, 8hmg:E, 8hmg:F, 8hmg:G, 8hmg:H, 8hmg:I, 8hmh:B, 8hmh:A, 6k88:A, 6k88:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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